CRISPRone

CRISPRone report for GCA_002302285.1_ASM230228v1

♦ Seq 1: MPEM01000007.1 Clostridioides difficile strain 6632-NonSp/ST3 LCH6632_contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 212103 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120360-120787 bp Zoom in on locus 1 x7 CRISPR array Location: 120360-120787 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 120360-120787 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120360-120787 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPEM01000018.1 Clostridioides difficile strain 6632-NonSp/ST3 LCH6632_contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 61229 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46441-47651 bp Zoom in on locus 1 x19 CRISPR array Location: 46441-47651 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 46441-47651 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46441-47651 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPEM01000004.1 Clostridioides difficile strain 6632-NonSp/ST3 LCH6632_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 336706 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53333-55070 bp 2 Locus 2: 222225-227493 bp 3 Locus 3: 318367-318858 bp Zoom in on locus 1 x27 Zoom in on locus 2 x4 x13 x4 Zoom in on locus 3 x8 CRISPR array Location: 53333-55070 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 53333-55070 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 222225-222449 bp Num of repeats: 4 Spacers: s27-s29 CRISPR array Location: 222225-222449 bp Num of repeats: 4 Spacers: s27-s29 CRISPR array Location: 225846-226665 bp Num of repeats: 13 Spacers: s30-s41 CRISPR array Location: 225846-226665 bp Num of repeats: 13 Spacers: s30-s41 CRISPR array Location: 227268-227493 bp Num of repeats: 4 Spacers: s42-s44 CRISPR array Location: 227268-227493 bp Num of repeats: 4 Spacers: s42-s44 CRISPR array Location: 318367-318858 bp Num of repeats: 8 Spacers: s45-s51 CRISPR array Location: 318367-318858 bp Num of repeats: 8 Spacers: s45-s51 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53333-55070 bp]: array | spacers
           [Locus range 222225-222449 bp]: array | spacers
           [Locus range 225846-226665 bp]: array | spacers
           [Locus range 227268-227493 bp]: array | spacers
           [Locus range 318367-318858 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPEM01000001.1 Clostridioides difficile strain 6632-NonSp/ST3 LCH6632_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 646492 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 405184-413049 bp 2 Locus 2: 486316-486671 bp Zoom in on locus 1 Zoom in on locus 2 x6 Gene: cd09641:cas3HD Type: Type-I Location: 405184-407592 bp Gene: cd09693:cas5 Type: Type-I Location: 407619-408416 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 408432-409445 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 409465-410940 bp Gene: pfam01881:cas6 Type: other Location: 410945-411682 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 411940-413049 bp CRISPR array Location: 486316-486671 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 486316-486671 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 486316-486671 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPEM01000029.1 Clostridioides difficile strain 6632-NonSp/ST3 LCH6632_contig000029, whole genome shotgun sequence

⇒Summary: seq-len = 9317 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4724-5676 bp Zoom in on locus 1 x15 CRISPR array Location: 4724-5676 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 4724-5676 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4724-5676 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)