CRISPRone

CRISPRone report for GCA_002302305.1_ASM230230v1

♦ Seq 1: MPEN01000008.1 Clostridioides difficile strain 6633-DH/ST42 6633_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 147500 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143563-144577 bp Zoom in on locus 1 x16 CRISPR array Location: 143563-144577 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 143563-144577 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 143563-144577 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPEN01000030.1 Clostridioides difficile strain 6633-DH/ST42 6633_contig000030, whole genome shotgun sequence

⇒Summary: seq-len = 29105 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10204-11293 bp Zoom in on locus 1 x17 CRISPR array Location: 10204-11293 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 10204-11293 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10204-11293 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPEN01000005.1 Clostridioides difficile strain 6633-DH/ST42 6633_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 188771 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185935-186294 bp Zoom in on locus 1 x6 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185935-186294 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPEN01000001.1 Clostridioides difficile strain 6633-DH/ST42 6633_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 674278 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254256-265556 bp Zoom in on locus 1 x27 CRISPR array Location: 254256-255991 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 254256-255991 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 256175-256441 bp Gene: cd09722:cas1 Type: universal Location: 256444-257424 bp Gene: pfam01930:cas4 Type: Type-I Location: 257427-257945 bp Gene: COG1203:cas3 Type: Type-I Location: 257993-260314 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 260325-261026 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 261028-261942 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261944-263821 bp Gene: pfam01881:cas6 Type: other Location: 263827-264621 bp Gene: pfam13280:WYL Type: other Location: 264642-265556 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 254256-255991 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPEN01000006.1 Clostridioides difficile strain 6633-DH/ST42 6633_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 184426 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5864-6158 bp Zoom in on locus 1 x5 CRISPR array Location: 5864-6158 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5864-6158 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5864-6158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPEN01000003.1 Clostridioides difficile strain 6633-DH/ST42 6633_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 271090 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 160918-162325 bp 2 Locus 2: 213237-213397 bp Zoom in on locus 1 x22 Zoom in on locus 2 x3 CRISPR array Location: 160918-162325 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 160918-162325 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 213237-213397 bp Num of repeats: 3 Spacers: s22-s23 CRISPR array Location: 213237-213397 bp Num of repeats: 3 Spacers: s22-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 160918-162325 bp]: array | spacers
           [Locus range 213237-213397 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MPEN01000002.1 Clostridioides difficile strain 6633-DH/ST42 6633_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 333183 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 149436-157301 bp 2 Locus 2: 230569-231126 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 149436-151844 bp Gene: cd09693:cas5 Type: Type-I Location: 151871-152668 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 152684-153697 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 153717-155192 bp Gene: pfam01881:cas6 Type: other Location: 155197-155934 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 156192-157301 bp CRISPR array Location: 230569-231126 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 230569-231126 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 230569-231126 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MPEN01000004.1 Clostridioides difficile strain 6633-DH/ST42 6633_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 250176 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38255-39471 bp Zoom in on locus 1 x19 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38255-39471 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)