CRISPRone

CRISPRone report for GCA_002302685.1_ASM230268v1

♦ Seq 1: MPEZ01000063.1 Clostridioides difficile strain 7461-BK/ST11 7461_contig000063, whole genome shotgun sequence

⇒Summary: seq-len = 20161 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1799-2613 bp Zoom in on locus 1 x13 CRISPR array Location: 1799-2613 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1799-2613 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1799-2613 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPEZ01000024.1 Clostridioides difficile strain 7461-BK/ST11 7461_contig000024, whole genome shotgun sequence

⇒Summary: seq-len = 59994 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53174-59662 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 53174-55582 bp Gene: cd09693:cas5 Type: Type-I Location: 55609-56406 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 56422-57435 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 57454-58920 bp Gene: pfam01881:cas6 Type: other Location: 58925-59662 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPEZ01000018.1 Clostridioides difficile strain 7461-BK/ST11 7461_contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 73854 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61786-73439 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61786-62076 bp Gene: cd09722:cas1 Type: universal Location: 62287-63294 bp Gene: pfam01930:cas4 Type: Type-I Location: 63320-63814 bp CRISPR array Location: 63899-66497 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63899-66497 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64522-64650 bp Gene: cd09641:cas3HD Type: Type-I Location: 66687-69245 bp Gene: cd09693:cas5 Type: Type-I Location: 69269-70009 bp Gene: pfam05107:cas7b Type: Type-I Location: 70011-71000 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70993-72732 bp Gene: cd09652:cas6 Type: other Location: 72744-73439 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63899-66497 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPEZ01000055.1 Clostridioides difficile strain 7461-BK/ST11 7461_contig000055, whole genome shotgun sequence

⇒Summary: seq-len = 22783 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10563-22262 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 10563-11516 bp Gene: pfam01881:cas6 Type: other Location: 11594-12331 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 12337-14187 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 14189-15103 bp Gene: cd09693:cas5 Type: Type-I Location: 15105-15806 bp Gene: COG1203:cas3 Type: Type-I Location: 15817-18138 bp Gene: pfam01930:cas4 Type: Type-I Location: 18153-18704 bp Gene: cd09722:cas1 Type: universal Location: 18707-19687 bp Gene: cd09725:cas2 Type: universal Location: 19690-19956 bp CRISPR array Location: 20140-22262 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 20140-22262 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20140-22262 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPEZ01000087.1 Clostridioides difficile strain 7461-BK/ST11 7461_contig000087, whole genome shotgun sequence

⇒Summary: seq-len = 6567 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3322-4470 bp Zoom in on locus 1 x18 CRISPR array Location: 3322-4470 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3322-4470 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3322-4470 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPEZ01000023.1 Clostridioides difficile strain 7461-BK/ST11 7461_contig000023, whole genome shotgun sequence

⇒Summary: seq-len = 64312 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4573-5199 bp Zoom in on locus 1 x10 CRISPR array Location: 4573-5199 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 4573-5199 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4573-5199 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MPEZ01000060.1 Clostridioides difficile strain 7461-BK/ST11 7461_contig000060, whole genome shotgun sequence

⇒Summary: seq-len = 20161 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7712-20022 bp Zoom in on locus 1 x44 CRISPR array Location: 7712-10576 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 7712-10576 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 17978-19633 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 19645-20022 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7712-10576 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)