CRISPRone

CRISPRone report for GCA_002302745.1_ASM230274v1

♦ Seq 1: MPFG01000021.1 Clostridioides difficile strain 7473-DH/ST42 7473_contig000021, whole genome shotgun sequence

⇒Summary: seq-len = 38424 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 568-4829 bp Zoom in on locus 1 Gene: cd09687:cas7 Type: Subtype-I-B Location: 568-1581 bp Gene: cd09693:cas5 Type: Type-I Location: 1597-2394 bp Gene: cd09641:cas3HD Type: Type-I Location: 2421-4829 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPFG01000103.1 Clostridioides difficile strain 7473-DH/ST42 7473_contig000103, whole genome shotgun sequence

⇒Summary: seq-len = 14209 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10430-10789 bp Zoom in on locus 1 x6 CRISPR array Location: 10430-10789 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 10430-10789 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10430-10789 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPFG01000244.1 Clostridioides difficile strain 7473-DH/ST42 7473_contig000244, whole genome shotgun sequence

⇒Summary: seq-len = 1720 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1685 bp Zoom in on locus 1 Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2-943 bp Gene: pfam01881:cas6 Type: other Location: 948-1685 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPFG01000214.1 Clostridioides difficile strain 7473-DH/ST42 7473_contig000214, whole genome shotgun sequence

⇒Summary: seq-len = 3712 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2355-3571 bp Zoom in on locus 1 x19 CRISPR array Location: 2355-3571 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 2355-3571 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2355-3571 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPFG01000085.1 Clostridioides difficile strain 7473-DH/ST42 7473_contig000085, whole genome shotgun sequence

⇒Summary: seq-len = 16480 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12244-13258 bp Zoom in on locus 1 x16 CRISPR array Location: 12244-13258 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 12244-13258 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12244-13258 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPFG01000227.1 Clostridioides difficile strain 7473-DH/ST42 7473_contig000227, whole genome shotgun sequence

⇒Summary: seq-len = 2819 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24-119 bp Zoom in on locus 1 x2 CRISPR array Location: 24-119 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 24-119 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24-119 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MPFG01000094.1 Clostridioides difficile strain 7473-DH/ST42 7473_contig000094, whole genome shotgun sequence

⇒Summary: seq-len = 15903 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-8560 bp Zoom in on locus 1 x23 Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1-1134 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1136-2050 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 2052-2753 bp Gene: COG1203:cas3 Type: Type-I Location: 2764-5085 bp Gene: pfam01930:cas4 Type: Type-I Location: 5100-5651 bp Gene: cd09722:cas1 Type: universal Location: 5654-6634 bp Gene: cd09725:cas2 Type: universal Location: 6637-6903 bp CRISPR array Location: 7087-8560 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 7087-8560 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7087-8560 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MPFG01000208.1 Clostridioides difficile strain 7473-DH/ST42 7473_contig000208, whole genome shotgun sequence

⇒Summary: seq-len = 3983 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1018 bp Zoom in on locus 1 x16 CRISPR array Location: 0-1018 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 0-1018 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1018 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MPFG01000099.1 Clostridioides difficile strain 7473-DH/ST42 7473_contig000099, whole genome shotgun sequence

⇒Summary: seq-len = 15389 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5520-5814 bp Zoom in on locus 1 x5 CRISPR array Location: 5520-5814 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5520-5814 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5520-5814 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MPFG01000062.1 Clostridioides difficile strain 7473-DH/ST42 7473_contig000062, whole genome shotgun sequence

⇒Summary: seq-len = 20523 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24-1364 bp Zoom in on locus 1 x21 CRISPR array Location: 24-1364 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 24-1364 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24-1364 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: MPFG01000205.1 Clostridioides difficile strain 7473-DH/ST42 7473_contig000205, whole genome shotgun sequence

⇒Summary: seq-len = 4211 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1947-2107 bp Zoom in on locus 1 x3 CRISPR array Location: 1947-2107 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1947-2107 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1947-2107 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: MPFG01000101.1 Clostridioides difficile strain 7473-DH/ST42 7473_contig000101, whole genome shotgun sequence

⇒Summary: seq-len = 14836 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10149-10707 bp Zoom in on locus 1 x9 CRISPR array Location: 10149-10707 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 10149-10707 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10149-10707 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)