CRISPRone

CRISPRone report for GCA_002302755.1_ASM230275v1

♦ Seq 1: MPEL01000010.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 109120 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25139-25495 bp 2 Locus 2: 105877-106234 bp Zoom in on locus 1 x6 Zoom in on locus 2 x6 CRISPR array Location: 25139-25495 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 25139-25495 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 105877-106234 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 105877-106234 bp Num of repeats: 6 Spacers: s6-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25139-25495 bp]: array | spacers
           [Locus range 105877-106234 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPEL01000011.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 107228 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104902-105130 bp Zoom in on locus 1 x4 CRISPR array Location: 104902-105130 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 104902-105130 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104902-105130 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPEL01000043.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000043, whole genome shotgun sequence

⇒Summary: seq-len = 31563 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 835-1656 bp Zoom in on locus 1 x13 CRISPR array Location: 835-1656 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 835-1656 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 835-1656 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPEL01000028.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000028, whole genome shotgun sequence

⇒Summary: seq-len = 58067 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 692-1119 bp Zoom in on locus 1 x7 CRISPR array Location: 692-1119 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 692-1119 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 692-1119 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPEL01000004.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 182779 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17131-29016 bp Zoom in on locus 1 x36 Gene: pfam13280:WYL Type: other Location: 17131-18018 bp Gene: pfam01881:cas6 Type: other Location: 18096-18833 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18839-20716 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20718-21632 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21634-22335 bp Gene: COG1203:cas3 Type: Type-I Location: 22346-24667 bp Gene: pfam01930:cas4 Type: Type-I Location: 24682-25233 bp Gene: cd09722:cas1 Type: universal Location: 25236-26216 bp Gene: cd09725:cas2 Type: universal Location: 26219-26485 bp CRISPR array Location: 26669-29016 bp Num of repeats: 36 Spacers: s1-s35 CRISPR array Location: 26669-29016 bp Num of repeats: 36 Spacers: s1-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26669-29016 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPEL01000001.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 332831 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 169093-177402 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 169093-170202 bp Gene: unk Type: unknown Location: 170636-170812 bp Gene: pfam01881:cas6 Type: other Location: 170913-171650 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 171655-173121 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 173141-174154 bp Gene: cd09693:cas5 Type: Type-I Location: 174170-174967 bp Gene: cd09641:cas3HD Type: Type-I Location: 174994-177402 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MPEL01000013.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 100055 bp; # of CRISPR array = 1; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-3386 bp 2 Locus 2: 79333-79492 bp Zoom in on locus 1 Zoom in on locus 2 x3 Gene: cas14:cas14 Type: Type-V Location: 3-491 bp Gene: COG2378:WYL Type: other Location: 1130-2041 bp Gene: unk Type: unknown Location: 2152-2619 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 2787-3386 bp CRISPR array Location: 79333-79492 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 79333-79492 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 79333-79492 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MPEL01000008.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 124688 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46470-54215 bp Zoom in on locus 1 Gene: cd09652:cas6 Type: other Location: 46470-47156 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 47231-48910 bp Gene: pfam05107:cas7b Type: Type-I Location: 49069-50046 bp Gene: cd09693:cas5 Type: Type-I Location: 50049-50801 bp Gene: unk Type: unknown Location: 50851-51258 bp Gene: unk Type: unknown Location: 51446-51619 bp Gene: cd09641:cas3HD Type: Type-I Location: 51681-54215 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MPEL01000025.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000025, whole genome shotgun sequence

⇒Summary: seq-len = 66863 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4120-5468 bp Zoom in on locus 1 x21 CRISPR array Location: 4120-5468 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 4120-5468 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4120-5468 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)