CRISPRone

CRISPRone report for GCA_002302795.1_ASM230279v1

♦ Seq 1: MPFH01000016.1 Clostridioides difficile strain 7474-AL/ST58 LCH7474_contig000016, whole genome shotgun sequence

⇒Summary: seq-len = 97817 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78143-79222 bp Zoom in on locus 1 x17 CRISPR array Location: 78143-79222 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 78143-79222 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78143-79222 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPFH01000006.1 Clostridioides difficile strain 7474-AL/ST58 LCH7474_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 209947 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118185-119006 bp Zoom in on locus 1 x13 CRISPR array Location: 118185-119006 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 118185-119006 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118185-119006 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPFH01000015.1 Clostridioides difficile strain 7474-AL/ST58 LCH7474_contig000015, whole genome shotgun sequence

⇒Summary: seq-len = 100229 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95734-96554 bp Zoom in on locus 1 x13 CRISPR array Location: 95734-96554 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 95734-96554 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 95734-96554 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPFH01000023.1 Clostridioides difficile strain 7474-AL/ST58 LCH7474_contig000023, whole genome shotgun sequence

⇒Summary: seq-len = 68708 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6424-7763 bp Zoom in on locus 1 x21 CRISPR array Location: 6424-7763 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 6424-7763 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6424-7763 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPFH01000002.1 Clostridioides difficile strain 7474-AL/ST58 LCH7474_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 283259 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154276-162585 bp 2 Locus 2: 235865-235958 bp Zoom in on locus 1 Zoom in on locus 2 x2 Gene: cd09641:cas3HD Type: Type-I Location: 154276-156684 bp Gene: cd09693:cas5 Type: Type-I Location: 156711-157508 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 157524-158537 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 158557-160023 bp Gene: pfam01881:cas6 Type: other Location: 160028-160765 bp Gene: unk Type: unknown Location: 160866-161042 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 161476-162585 bp CRISPR array Location: 235865-235958 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 235865-235958 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 235865-235958 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPFH01000017.1 Clostridioides difficile strain 7474-AL/ST58 LCH7474_contig000017, whole genome shotgun sequence

⇒Summary: seq-len = 93873 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44848-45866 bp 2 Locus 2: 91544-91903 bp Zoom in on locus 1 x16 Zoom in on locus 2 x6 CRISPR array Location: 44848-45866 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 44848-45866 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 91544-91903 bp Num of repeats: 6 Spacers: s16-s20 CRISPR array Location: 91544-91903 bp Num of repeats: 6 Spacers: s16-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44848-45866 bp]: array | spacers
           [Locus range 91544-91903 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MPFH01000010.1 Clostridioides difficile strain 7474-AL/ST58 LCH7474_contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 139864 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138633-139051 bp Zoom in on locus 1 x7 CRISPR array Location: 138633-139051 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 138633-139051 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138633-139051 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MPFH01000001.1 Clostridioides difficile strain 7474-AL/ST58 LCH7474_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 414634 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256233-266457 bp Zoom in on locus 1 x11 CRISPR array Location: 256233-256919 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 256233-256919 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 257103-257369 bp Gene: cd09722:cas1 Type: universal Location: 257372-258352 bp Gene: pfam01930:cas4 Type: Type-I Location: 258355-258873 bp Gene: COG1203:cas3 Type: Type-I Location: 258921-261242 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 261253-261954 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 261956-262870 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 262872-264722 bp Gene: pfam01881:cas6 Type: other Location: 264728-265522 bp Gene: pfam13280:WYL Type: other Location: 265543-266457 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256233-256919 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MPFH01000042.1 Clostridioides difficile strain 7474-AL/ST58 LCH7474_contig000042, whole genome shotgun sequence

⇒Summary: seq-len = 7324 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2068-2229 bp Zoom in on locus 1 x3 CRISPR array Location: 2068-2229 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2068-2229 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2068-2229 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)