CRISPRone

CRISPRone report for GCA_002302945.1_ASM230294v1

♦ Seq 1: MPFO01000242.1 Clostridioides difficile strain 7483-CF/ST37 7483_contig000242, whole genome shotgun sequence

⇒Summary: seq-len = 2286 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1927-2021 bp Zoom in on locus 1 x2 CRISPR array Location: 1927-2021 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1927-2021 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1927-2021 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPFO01000032.1 Clostridioides difficile strain 7483-CF/ST37 7483_contig000032, whole genome shotgun sequence

⇒Summary: seq-len = 33168 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11862-12482 bp Zoom in on locus 1 x10 CRISPR array Location: 11862-12482 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 11862-12482 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11862-12482 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPFO01000047.1 Clostridioides difficile strain 7483-CF/ST37 7483_contig000047, whole genome shotgun sequence

⇒Summary: seq-len = 27349 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3559-3915 bp Zoom in on locus 1 x6 CRISPR array Location: 3559-3915 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3559-3915 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3559-3915 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPFO01000002.1 Clostridioides difficile strain 7483-CF/ST37 7483_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 89654 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28275-37998 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28275-30683 bp Gene: cd09693:cas5 Type: Type-I Location: 30710-31507 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31523-32536 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32556-34022 bp Gene: pfam01881:cas6 Type: other Location: 34027-34764 bp Gene: unk Type: unknown Location: 35078-35536 bp Gene: cas14:cas14 Type: Type-V Location: 35564-36736 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 36889-37998 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPFO01000034.1 Clostridioides difficile strain 7483-CF/ST37 7483_contig000034, whole genome shotgun sequence

⇒Summary: seq-len = 31728 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29254-29415 bp Zoom in on locus 1 x3 CRISPR array Location: 29254-29415 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29254-29415 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29254-29415 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPFO01000234.1 Clostridioides difficile strain 7483-CF/ST37 7483_contig000234, whole genome shotgun sequence

⇒Summary: seq-len = 2905 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2342-2762 bp Zoom in on locus 1 x7 CRISPR array Location: 2342-2762 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2342-2762 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2342-2762 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)