CRISPRone

CRISPRone report for GCA_002303045.1_ASM230304v1

♦ Seq 1: MPFQ01000003.1 Clostridioides difficile strain 7492-CF/ST37 7492_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 259869 bp; # of CRISPR array = 0; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71412-81135 bp 2 Locus 2: 132345-143303 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 71412-72521 bp Gene: cas14:cas14 Type: Type-V Location: 72674-73846 bp Gene: unk Type: unknown Location: 73874-74332 bp Gene: unk Type: unknown Location: 74480-74614 bp Gene: pfam01881:cas6 Type: other Location: 74646-75383 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 75388-76854 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 76874-77887 bp Gene: cd09693:cas5 Type: Type-I Location: 77903-78700 bp Gene: cd09641:cas3HD Type: Type-I Location: 78727-81135 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 132345-132830 bp Gene: cd06127:DEDDh Type: Type-I Location: 139633-140679 bp Gene: unk Type: unknown Location: 141051-141557 bp Gene: unk Type: unknown Location: 141970-142638 bp Gene: cd06127:DEDDh Type: Type-I Location: 142797-143303 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPFQ01000014.1 Clostridioides difficile strain 7492-CF/ST37 7492_contig000014, whole genome shotgun sequence

⇒Summary: seq-len = 106765 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98015-98372 bp Zoom in on locus 1 x6 CRISPR array Location: 98015-98372 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 98015-98372 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 98015-98372 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPFQ01000020.1 Clostridioides difficile strain 7492-CF/ST37 7492_contig000020, whole genome shotgun sequence

⇒Summary: seq-len = 80053 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59507-59667 bp Zoom in on locus 1 x3 CRISPR array Location: 59507-59667 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 59507-59667 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59507-59667 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPFQ01000005.1 Clostridioides difficile strain 7492-CF/ST37 7492_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 227889 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102600-103019 bp Zoom in on locus 1 x7 CRISPR array Location: 102600-103019 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 102600-103019 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 102600-103019 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPFQ01000007.1 Clostridioides difficile strain 7492-CF/ST37 7492_contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 198800 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194183-194278 bp Zoom in on locus 1 x2 CRISPR array Location: 194183-194278 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194183-194278 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194183-194278 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPFQ01000025.1 Clostridioides difficile strain 7492-CF/ST37 7492_contig000025, whole genome shotgun sequence

⇒Summary: seq-len = 57595 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45264-45883 bp Zoom in on locus 1 x10 CRISPR array Location: 45264-45883 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 45264-45883 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45264-45883 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)