CRISPRone

CRISPRone report for GCA_002303105.1_ASM230310v1

♦ Seq 1: MPFT01000134.1 Clostridioides difficile strain 7497-NonSp/novelST LCH7497_contig000134, whole genome shotgun sequence

⇒Summary: seq-len = 4232 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2091-2253 bp Zoom in on locus 1 x3 CRISPR array Location: 2091-2253 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2091-2253 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2091-2253 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPFT01000002.1 Clostridioides difficile strain 7497-NonSp/novelST LCH7497_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 182259 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 161045-172483 bp Zoom in on locus 1 x29 CRISPR array Location: 161045-162918 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 161045-162918 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09725:cas2 Type: universal Location: 163102-163368 bp Gene: cd09722:cas1 Type: universal Location: 163371-164351 bp Gene: pfam01930:cas4 Type: Type-I Location: 164354-164872 bp Gene: COG1203:cas3 Type: Type-I Location: 164920-167241 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 167252-167953 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 167955-168869 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 168871-170748 bp Gene: pfam01881:cas6 Type: other Location: 170754-171548 bp Gene: pfam13280:WYL Type: other Location: 171569-172483 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 161045-162918 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPFT01000046.1 Clostridioides difficile strain 7497-NonSp/novelST LCH7497_contig000046, whole genome shotgun sequence

⇒Summary: seq-len = 29120 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 322-1269 bp Zoom in on locus 1 x15 CRISPR array Location: 322-1269 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 322-1269 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 322-1269 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPFT01000026.1 Clostridioides difficile strain 7497-NonSp/novelST LCH7497_contig000026, whole genome shotgun sequence

⇒Summary: seq-len = 46687 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11899-12188 bp Zoom in on locus 1 x5 CRISPR array Location: 11899-12188 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 11899-12188 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11899-12188 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPFT01000088.1 Clostridioides difficile strain 7497-NonSp/novelST LCH7497_contig000088, whole genome shotgun sequence

⇒Summary: seq-len = 13185 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2766-3788 bp Zoom in on locus 1 x16 CRISPR array Location: 2766-3788 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 2766-3788 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2766-3788 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPFT01000098.1 Clostridioides difficile strain 7497-NonSp/novelST LCH7497_contig000098, whole genome shotgun sequence

⇒Summary: seq-len = 10181 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5191-5551 bp Zoom in on locus 1 x6 CRISPR array Location: 5191-5551 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5191-5551 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5191-5551 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MPFT01000003.1 Clostridioides difficile strain 7497-NonSp/novelST LCH7497_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 145982 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 68513-76865 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 68513-70921 bp Gene: cd09693:cas5 Type: Type-I Location: 70948-71754 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 71770-72783 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 72803-74278 bp Gene: pfam01881:cas6 Type: other Location: 74283-75020 bp Gene: unk Type: unknown Location: 75121-75297 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 75756-76865 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MPFT01000104.1 Clostridioides difficile strain 7497-NonSp/novelST LCH7497_contig000104, whole genome shotgun sequence

⇒Summary: seq-len = 9601 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5690-6447 bp Zoom in on locus 1 x12 CRISPR array Location: 5690-6447 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 5690-6447 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5690-6447 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MPFT01000094.1 Clostridioides difficile strain 7497-NonSp/novelST LCH7497_contig000094, whole genome shotgun sequence

⇒Summary: seq-len = 11158 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6026-6186 bp Zoom in on locus 1 x3 CRISPR array Location: 6026-6186 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6026-6186 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6026-6186 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)