CRISPRone

CRISPRone report for GCA_002303155.1_ASM230315v1

♦ Seq 1: MPFV01000107.1 Clostridioides difficile strain 7499-CF/ST37 7499_contig000107, whole genome shotgun sequence

⇒Summary: seq-len = 12181 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9164-9323 bp Zoom in on locus 1 x3 CRISPR array Location: 9164-9323 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9164-9323 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9164-9323 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPFV01000012.1 Clostridioides difficile strain 7499-CF/ST37 7499_contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 39022 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32387-38876 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 32387-34795 bp Gene: cd09693:cas5 Type: Type-I Location: 34822-35619 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 35635-36648 bp Gene: unk Type: unknown Location: 36668-37405 bp Gene: unk Type: unknown Location: 37463-38134 bp Gene: pfam01881:cas6 Type: other Location: 38139-38876 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPFV01000087.1 Clostridioides difficile strain 7499-CF/ST37 7499_contig000087, whole genome shotgun sequence

⇒Summary: seq-len = 14757 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8625-11679 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 8625-8785 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8625-8785 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 11453-11679 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 11453-11679 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8625-8785 bp]: array | spacers
           [Locus range 11453-11679 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPFV01000386.1 Clostridioides difficile strain 7499-CF/ST37 7499_contig000386, whole genome shotgun sequence

⇒Summary: seq-len = 1524 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 565-984 bp Zoom in on locus 1 x7 CRISPR array Location: 565-984 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 565-984 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 565-984 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPFV01000280.1 Clostridioides difficile strain 7499-CF/ST37 7499_contig000280, whole genome shotgun sequence

⇒Summary: seq-len = 3909 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 666-892 bp Zoom in on locus 1 x4 CRISPR array Location: 666-892 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 666-892 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 666-892 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPFV01000410.1 Clostridioides difficile strain 7499-CF/ST37 7499_contig000410, whole genome shotgun sequence

⇒Summary: seq-len = 1105 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48-667 bp Zoom in on locus 1 x10 CRISPR array Location: 48-667 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 48-667 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 48-667 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MPFV01000121.1 Clostridioides difficile strain 7499-CF/ST37 7499_contig000121, whole genome shotgun sequence

⇒Summary: seq-len = 11003 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5861-6021 bp Zoom in on locus 1 x3 CRISPR array Location: 5861-6021 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5861-6021 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5861-6021 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)