CRISPRone

CRISPRone report for GCA_002303245.1_ASM230324v1

♦ Seq 1: MOTA01000059.1 Clostridioides difficile strain 6612-DH/ST28 6612_contig000059, whole genome shotgun sequence

⇒Summary: seq-len = 8192 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1934-2229 bp Zoom in on locus 1 x5 CRISPR array Location: 1934-2229 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1934-2229 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1934-2229 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOTA01000007.1 Clostridioides difficile strain 6612-DH/ST28 6612_contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 156657 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120907-121266 bp Zoom in on locus 1 x6 CRISPR array Location: 120907-121266 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 120907-121266 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120907-121266 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOTA01000021.1 Clostridioides difficile strain 6612-DH/ST28 6612_contig000021, whole genome shotgun sequence

⇒Summary: seq-len = 80073 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56817-58224 bp Zoom in on locus 1 x22 CRISPR array Location: 56817-58224 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 56817-58224 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56817-58224 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOTA01000009.1 Clostridioides difficile strain 6612-DH/ST28 6612_contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 142495 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65430-73295 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 65430-67838 bp Gene: cd09693:cas5 Type: Type-I Location: 67865-68662 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 68678-69691 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 69711-71186 bp Gene: pfam01881:cas6 Type: other Location: 71191-71928 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 72186-73295 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOTA01000064.1 Clostridioides difficile strain 6612-DH/ST28 6612_contig000064, whole genome shotgun sequence

⇒Summary: seq-len = 3861 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 452-1667 bp Zoom in on locus 1 x19 CRISPR array Location: 452-1667 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 452-1667 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 452-1667 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOTA01000031.1 Clostridioides difficile strain 6612-DH/ST28 6612_contig000031, whole genome shotgun sequence

⇒Summary: seq-len = 42713 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38600-39557 bp Zoom in on locus 1 x15 CRISPR array Location: 38600-39557 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 38600-39557 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38600-39557 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOTA01000006.1 Clostridioides difficile strain 6612-DH/ST28 6612_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 159510 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62568-73777 bp Zoom in on locus 1 x26 Gene: pfam13280:WYL Type: other Location: 62568-63455 bp Gene: pfam01881:cas6 Type: other Location: 63533-64270 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 64276-66153 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 66155-67069 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 67071-67772 bp Gene: COG1203:cas3 Type: Type-I Location: 67783-70104 bp Gene: pfam01930:cas4 Type: Type-I Location: 70119-70670 bp Gene: cd09722:cas1 Type: universal Location: 70673-71653 bp Gene: cd09725:cas2 Type: universal Location: 71656-71922 bp CRISPR array Location: 72106-73777 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 72106-73777 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 72106-73777 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MOTA01000001.1 Clostridioides difficile strain 6612-DH/ST28 6612_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 249212 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3924-4481 bp Zoom in on locus 1 x9 CRISPR array Location: 3924-4481 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3924-4481 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3924-4481 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MOTA01000013.1 Clostridioides difficile strain 6612-DH/ST28 6612_contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 115270 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97484-97643 bp Zoom in on locus 1 x3 CRISPR array Location: 97484-97643 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 97484-97643 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 97484-97643 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MOTA01000002.1 Clostridioides difficile strain 6612-DH/ST28 6612_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 186652 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182715-183729 bp Zoom in on locus 1 x16 CRISPR array Location: 182715-183729 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 182715-183729 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182715-183729 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)