CRISPRone

CRISPRone report for GCA_002303265.1_ASM230326v1

♦ Seq 1: MPJP01000007.1 Clostridioides difficile strain 6614-AL/ST34 6614_contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 206143 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189927-190345 bp Zoom in on locus 1 x7 CRISPR array Location: 189927-190345 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 189927-190345 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189927-190345 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPJP01000002.1 Clostridioides difficile strain 6614-AL/ST34 6614_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 791790 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252846-263070 bp Zoom in on locus 1 x11 CRISPR array Location: 252846-253532 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 252846-253532 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 253716-253982 bp Gene: cd09722:cas1 Type: universal Location: 253985-254965 bp Gene: pfam01930:cas4 Type: Type-I Location: 254968-255486 bp Gene: COG1203:cas3 Type: Type-I Location: 255534-257855 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 257866-258567 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258569-259483 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259485-261335 bp Gene: pfam01881:cas6 Type: other Location: 261341-262135 bp Gene: pfam13280:WYL Type: other Location: 262156-263070 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252846-253532 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPJP01000008.1 Clostridioides difficile strain 6614-AL/ST34 6614_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 170979 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112627-114032 bp Zoom in on locus 1 x22 CRISPR array Location: 112627-114032 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 112627-114032 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112627-114032 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPJP01000006.1 Clostridioides difficile strain 6614-AL/ST34 6614_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 220829 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129027-129450 bp Zoom in on locus 1 x7 CRISPR array Location: 129027-129450 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 129027-129450 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 129027-129450 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPJP01000019.1 Clostridioides difficile strain 6614-AL/ST34 6614_contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 18889 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8317-8477 bp Zoom in on locus 1 x3 CRISPR array Location: 8317-8477 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8317-8477 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8317-8477 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPJP01000012.1 Clostridioides difficile strain 6614-AL/ST34 6614_contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 97495 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78276-78899 bp Zoom in on locus 1 x10 CRISPR array Location: 78276-78899 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 78276-78899 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78276-78899 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MPJP01000001.1 Clostridioides difficile strain 6614-AL/ST34 6614_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 877387 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12184-12542 bp 2 Locus 2: 87415-88498 bp 3 Locus 3: 389803-390557 bp 4 Locus 4: 553934-562243 bp 5 Locus 5: 635523-635616 bp Zoom in on locus 1 x6 Zoom in on locus 2 x17 Zoom in on locus 3 x12 Zoom in on locus 4 Zoom in on locus 5 x2 CRISPR array Location: 12184-12542 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 12184-12542 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 87415-88498 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 87415-88498 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 389803-390557 bp Num of repeats: 12 Spacers: s22-s32 CRISPR array Location: 389803-390557 bp Num of repeats: 12 Spacers: s22-s32 Gene: cd09641:cas3HD Type: Type-I Location: 553934-556342 bp Gene: cd09693:cas5 Type: Type-I Location: 556369-557166 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 557182-558195 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 558215-559681 bp Gene: pfam01881:cas6 Type: other Location: 559686-560423 bp Gene: unk Type: unknown Location: 560524-560700 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 561134-562243 bp CRISPR array Location: 635523-635616 bp Num of repeats: 2 Spacers: s33-s33 CRISPR array Location: 635523-635616 bp Num of repeats: 2 Spacers: s33-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12184-12542 bp]: array | spacers
           [Locus range 87415-88498 bp]: array | spacers
           [Locus range 389803-390557 bp]: array | spacers
           [Locus range 635523-635616 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)