CRISPRone

CRISPRone report for GCA_002303305.1_ASM230330v1

♦ Seq 1: MPJO01000026.1 Clostridioides difficile strain 6606-BK/ST11 6606_contig000026, whole genome shotgun sequence

⇒Summary: seq-len = 64248 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45958-46772 bp Zoom in on locus 1 x13 CRISPR array Location: 45958-46772 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 45958-46772 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45958-46772 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPJO01000029.1 Clostridioides difficile strain 6606-BK/ST11 6606_contig000029, whole genome shotgun sequence

⇒Summary: seq-len = 57779 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37721-50032 bp Zoom in on locus 1 x44 Gene: COG0640:csa3 Type: Subtype-I-A Location: 37721-38098 bp Gene: cd09718:cas1 Type: universal Location: 38110-39765 bp CRISPR array Location: 47167-50032 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 47167-50032 bp Num of repeats: 44 Spacers: s1-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 47167-50032 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPJO01000020.1 Clostridioides difficile strain 6606-BK/ST11 6606_contig000020, whole genome shotgun sequence

⇒Summary: seq-len = 83208 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23539-24165 bp Zoom in on locus 1 x10 CRISPR array Location: 23539-24165 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 23539-24165 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23539-24165 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPJO01000002.1 Clostridioides difficile strain 6606-BK/ST11 6606_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 196754 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3253-14206 bp 2 Locus 2: 66809-75136 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 3253-3759 bp Gene: unk Type: unknown Location: 3918-4586 bp Gene: unk Type: unknown Location: 4999-5505 bp Gene: cd06127:DEDDh Type: Type-I Location: 5869-6906 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 13721-14206 bp Gene: cd09641:cas3HD Type: Type-I Location: 66809-69217 bp Gene: cd09693:cas5 Type: Type-I Location: 69244-70041 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 70057-71070 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 71089-72555 bp Gene: pfam01881:cas6 Type: other Location: 72560-73297 bp Gene: unk Type: unknown Location: 73398-73574 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 74027-75136 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPJO01000019.1 Clostridioides difficile strain 6606-BK/ST11 6606_contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 89755 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10463-22162 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 10463-11416 bp Gene: pfam01881:cas6 Type: other Location: 11494-12231 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 12237-14087 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 14089-15003 bp Gene: cd09693:cas5 Type: Type-I Location: 15005-15706 bp Gene: COG1203:cas3 Type: Type-I Location: 15717-18038 bp Gene: pfam01930:cas4 Type: Type-I Location: 18053-18604 bp Gene: cd09722:cas1 Type: universal Location: 18607-19587 bp Gene: cd09725:cas2 Type: universal Location: 19590-19856 bp CRISPR array Location: 20040-22162 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 20040-22162 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20040-22162 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPJO01000009.1 Clostridioides difficile strain 6606-BK/ST11 6606_contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 141252 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61786-73307 bp Zoom in on locus 1 x38 Gene: cd09725:cas2 Type: universal Location: 61786-62076 bp Gene: cd09722:cas1 Type: universal Location: 62287-63294 bp Gene: pfam01930:cas4 Type: Type-I Location: 63320-63814 bp CRISPR array Location: 63899-66365 bp Num of repeats: 38 Spacers: s1-s37 CRISPR array Location: 63899-66365 bp Num of repeats: 38 Spacers: s1-s37 Gene: unk Type: unknown Location: 63996-64163 bp Gene: unk Type: unknown Location: 64456-64584 bp Gene: cd09641:cas3HD Type: Type-I Location: 66555-69113 bp Gene: cd09693:cas5 Type: Type-I Location: 69137-69877 bp Gene: pfam05107:cas7b Type: Type-I Location: 69879-70868 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70861-72600 bp Gene: cd09652:cas6 Type: other Location: 72612-73307 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63899-66365 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MPJO01000038.1 Clostridioides difficile strain 6606-BK/ST11 6606_contig000038, whole genome shotgun sequence

⇒Summary: seq-len = 31132 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27887-29035 bp Zoom in on locus 1 x18 CRISPR array Location: 27887-29035 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 27887-29035 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27887-29035 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)