CRISPRone

CRISPRone report for GCA_002303325.1_ASM230332v1

♦ Seq 1: MOSX01000006.1 Clostridioides difficile strain 6607-DH/ST42 6607_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 191526 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91005-91299 bp Zoom in on locus 1 x5 CRISPR array Location: 91005-91299 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 91005-91299 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91005-91299 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOSX01000010.1 Clostridioides difficile strain 6607-DH/ST42 6607_contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 154506 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135557-136383 bp Zoom in on locus 1 x13 CRISPR array Location: 135557-136383 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 135557-136383 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135557-136383 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOSX01000004.1 Clostridioides difficile strain 6607-DH/ST42 6607_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 294343 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185935-186294 bp Zoom in on locus 1 x6 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185935-186294 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOSX01000001.1 Clostridioides difficile strain 6607-DH/ST42 6607_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 896545 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244732-245290 bp 2 Locus 2: 318565-326430 bp 3 Locus 3: 488408-489423 bp 4 Locus 4: 838562-839969 bp 5 Locus 5: 890881-891041 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x16 Zoom in on locus 4 x22 Zoom in on locus 5 x3 CRISPR array Location: 244732-245290 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244732-245290 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318565-319674 bp Gene: pfam01881:cas6 Type: other Location: 319932-320669 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320674-322149 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322169-323182 bp Gene: cd09693:cas5 Type: Type-I Location: 323198-323995 bp Gene: cd09641:cas3HD Type: Type-I Location: 324022-326430 bp CRISPR array Location: 488408-489423 bp Num of repeats: 16 Spacers: s9-s23 CRISPR array Location: 488408-489423 bp Num of repeats: 16 Spacers: s9-s23 CRISPR array Location: 838562-839969 bp Num of repeats: 22 Spacers: s24-s44 CRISPR array Location: 838562-839969 bp Num of repeats: 22 Spacers: s24-s44 CRISPR array Location: 890881-891041 bp Num of repeats: 3 Spacers: s45-s46 CRISPR array Location: 890881-891041 bp Num of repeats: 3 Spacers: s45-s46 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244732-245290 bp]: array | spacers
           [Locus range 488408-489423 bp]: array | spacers
           [Locus range 838562-839969 bp]: array | spacers
           [Locus range 890881-891041 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOSX01000002.1 Clostridioides difficile strain 6607-DH/ST42 6607_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 605127 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 516350-527624 bp Zoom in on locus 1 x27 Gene: pfam13280:WYL Type: other Location: 516350-517237 bp Gene: pfam01881:cas6 Type: other Location: 517315-518052 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 518058-519935 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 519937-520851 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 520853-521554 bp Gene: COG1203:cas3 Type: Type-I Location: 521565-523886 bp Gene: pfam01930:cas4 Type: Type-I Location: 523901-524452 bp Gene: cd09722:cas1 Type: universal Location: 524455-525435 bp Gene: cd09725:cas2 Type: universal Location: 525438-525704 bp CRISPR array Location: 525888-527624 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 525888-527624 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 525888-527624 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOSX01000067.1 Clostridioides difficile strain 6607-DH/ST42 6607_contig000067, whole genome shotgun sequence

⇒Summary: seq-len = 390 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36-394 bp Zoom in on locus 1 x6 CRISPR array Location: 36-394 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 36-394 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36-394 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOSX01000003.1 Clostridioides difficile strain 6607-DH/ST42 6607_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 351727 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38255-39471 bp Zoom in on locus 1 x19 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38255-39471 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)