CRISPRone

CRISPRone report for GCA_002303385.1_ASM230338v1

♦ Seq 1: MOTB01000005.1 Clostridioides difficile strain 6613-NonSp/ST3 6613_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 212582 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120468-120895 bp Zoom in on locus 1 x7 CRISPR array Location: 120468-120895 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 120468-120895 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120468-120895 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOTB01000006.1 Clostridioides difficile strain 6613-NonSp/ST3 6613_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 164260 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4206-4430 bp Zoom in on locus 1 x4 CRISPR array Location: 4206-4430 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 4206-4430 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4206-4430 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOTB01000004.1 Clostridioides difficile strain 6613-NonSp/ST3 6613_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 239997 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143997-149331 bp Zoom in on locus 1 x4 x13 x4 CRISPR array Location: 143997-144221 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 143997-144221 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 147684-148503 bp Num of repeats: 13 Spacers: s4-s15 CRISPR array Location: 147684-148503 bp Num of repeats: 13 Spacers: s4-s15 CRISPR array Location: 149106-149331 bp Num of repeats: 4 Spacers: s16-s18 CRISPR array Location: 149106-149331 bp Num of repeats: 4 Spacers: s16-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 143997-144221 bp]: array | spacers
           [Locus range 147684-148503 bp]: array | spacers
           [Locus range 149106-149331 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOTB01000028.1 Clostridioides difficile strain 6613-NonSp/ST3 6613_contig000028, whole genome shotgun sequence

⇒Summary: seq-len = 50198 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46596-47803 bp Zoom in on locus 1 x19 CRISPR array Location: 46596-47803 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 46596-47803 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46596-47803 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOTB01000038.1 Clostridioides difficile strain 6613-NonSp/ST3 6613_contig000038, whole genome shotgun sequence

⇒Summary: seq-len = 31228 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23088-24826 bp Zoom in on locus 1 x27 CRISPR array Location: 23088-24826 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 23088-24826 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23088-24826 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOTB01000046.1 Clostridioides difficile strain 6613-NonSp/ST3 6613_contig000046, whole genome shotgun sequence

⇒Summary: seq-len = 18278 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17775-18200 bp Zoom in on locus 1 x7 CRISPR array Location: 17775-18200 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 17775-18200 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17775-18200 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOTB01000001.1 Clostridioides difficile strain 6613-NonSp/ST3 6613_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 338119 bp; # of CRISPR array = 1; # of cas gene = 5  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98463-99215 bp 2 Locus 2: 261180-269045 bp Zoom in on locus 1 x12 Zoom in on locus 2 CRISPR array Location: 98463-99215 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 98463-99215 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 261180-263588 bp Gene: cd09693:cas5 Type: Type-I Location: 263615-264412 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 264428-265441 bp Gene: unk Type: unknown Location: 265461-266936 bp Gene: pfam01881:cas6 Type: other Location: 266941-267678 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 267936-269045 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 98463-99215 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)