CRISPRone

CRISPRone report for GCA_002303445.1_ASM230344v1

♦ Seq 1: MPJQ01000009.1 Clostridioides difficile strain 6617-A/ST43 6617_contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 217490 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125024-126238 bp Zoom in on locus 1 x19 CRISPR array Location: 125024-126238 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 125024-126238 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125024-126238 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPJQ01000005.1 Clostridioides difficile strain 6617-A/ST43 6617_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 300768 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 126044-137321 bp Zoom in on locus 1 x27 CRISPR array Location: 126044-127783 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 126044-127783 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 127967-128233 bp Gene: cd09722:cas1 Type: universal Location: 128236-129216 bp Gene: pfam01930:cas4 Type: Type-I Location: 129219-129737 bp Gene: COG1203:cas3 Type: Type-I Location: 129785-132106 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 132117-132818 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132820-133734 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133736-135586 bp Gene: pfam01881:cas6 Type: other Location: 135592-136386 bp Gene: pfam13280:WYL Type: other Location: 136407-137321 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 126044-127783 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPJQ01000003.1 Clostridioides difficile strain 6617-A/ST43 6617_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 420043 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 172110-172997 bp 2 Locus 2: 310419-311872 bp 3 Locus 3: 402525-403018 bp Zoom in on locus 1 x14 Zoom in on locus 2 x7 x7 Zoom in on locus 3 x8 CRISPR array Location: 172110-172997 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 172110-172997 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 310419-310842 bp Num of repeats: 7 Spacers: s14-s19 CRISPR array Location: 310419-310842 bp Num of repeats: 7 Spacers: s14-s19 CRISPR array Location: 311446-311872 bp Num of repeats: 7 Spacers: s20-s25 CRISPR array Location: 311446-311872 bp Num of repeats: 7 Spacers: s20-s25 CRISPR array Location: 402525-403018 bp Num of repeats: 8 Spacers: s26-s32 CRISPR array Location: 402525-403018 bp Num of repeats: 8 Spacers: s26-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 172110-172997 bp]: array | spacers
           [Locus range 310419-310842 bp]: array | spacers
           [Locus range 311446-311872 bp]: array | spacers
           [Locus range 402525-403018 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPJQ01000001.1 Clostridioides difficile strain 6617-A/ST43 6617_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 804100 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45585-46477 bp 2 Locus 2: 119701-128038 bp 3 Locus 3: 293559-294315 bp 4 Locus 4: 650083-650245 bp Zoom in on locus 1 x14 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x3 CRISPR array Location: 45585-46477 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 45585-46477 bp Num of repeats: 14 Spacers: s1-s13 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 119701-120810 bp Gene: unk Type: unknown Location: 121264-121440 bp Gene: pfam01881:cas6 Type: other Location: 121541-122278 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 122283-123749 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 123768-124781 bp Gene: cd09693:cas5 Type: Type-I Location: 124797-125603 bp Gene: cd09641:cas3HD Type: Type-I Location: 125630-128038 bp CRISPR array Location: 293559-294315 bp Num of repeats: 12 Spacers: s14-s24 CRISPR array Location: 293559-294315 bp Num of repeats: 12 Spacers: s14-s24 CRISPR array Location: 650083-650245 bp Num of repeats: 3 Spacers: s25-s26 CRISPR array Location: 650083-650245 bp Num of repeats: 3 Spacers: s25-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45585-46477 bp]: array | spacers
           [Locus range 293559-294315 bp]: array | spacers
           [Locus range 650083-650245 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)