CRISPRone

CRISPRone report for GCA_002303465.1_ASM230346v1

♦ Seq 1: MOTE01000014.1 Clostridioides difficile strain 6618-NonSp/ST53 6618_contig000014, whole genome shotgun sequence

⇒Summary: seq-len = 68061 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30057-31379 bp Zoom in on locus 1 x6 x6 CRISPR array Location: 30057-30415 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 30057-30415 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 31019-31379 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 31019-31379 bp Num of repeats: 6 Spacers: s6-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30057-30415 bp]: array | spacers
           [Locus range 31019-31379 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOTE01000054.1 Clostridioides difficile strain 6618-NonSp/ST53 6618_contig000054, whole genome shotgun sequence

⇒Summary: seq-len = 22915 bp; # of CRISPR array = 0; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17262-22898 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 17262-17909 bp Gene: pfam01881:cas6 Type: other Location: 17900-18664 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 18666-19814 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 19835-20905 bp Gene: cd09639:cas3 Type: Type-I Location: 20916-22001 bp Gene: COG1203:cas3 Type: Type-I Location: 22026-22898 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOTE01000122.1 Clostridioides difficile strain 6618-NonSp/ST53 6618_contig000122, whole genome shotgun sequence

⇒Summary: seq-len = 3442 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1398-1493 bp Zoom in on locus 1 x2 CRISPR array Location: 1398-1493 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1398-1493 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1398-1493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOTE01000079.1 Clostridioides difficile strain 6618-NonSp/ST53 6618_contig000079, whole genome shotgun sequence

⇒Summary: seq-len = 13762 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10262-10885 bp Zoom in on locus 1 x10 CRISPR array Location: 10262-10885 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 10262-10885 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10262-10885 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOTE01000026.1 Clostridioides difficile strain 6618-NonSp/ST53 6618_contig000026, whole genome shotgun sequence

⇒Summary: seq-len = 50017 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31962-42684 bp Zoom in on locus 1 x19 Gene: pfam13280:WYL Type: other Location: 31962-32849 bp Gene: pfam01881:cas6 Type: other Location: 32927-33664 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 33670-35520 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 35522-36436 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 36438-37139 bp Gene: COG1203:cas3 Type: Type-I Location: 37150-39471 bp Gene: pfam01930:cas4 Type: Type-I Location: 39486-40037 bp Gene: cd09722:cas1 Type: universal Location: 40040-41020 bp Gene: cd09725:cas2 Type: universal Location: 41023-41289 bp CRISPR array Location: 41473-42684 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 41473-42684 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 41473-42684 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOTE01000002.1 Clostridioides difficile strain 6618-NonSp/ST53 6618_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 197872 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190710-191264 bp Zoom in on locus 1 x9 CRISPR array Location: 190710-191264 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 190710-191264 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190710-191264 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOTE01000080.1 Clostridioides difficile strain 6618-NonSp/ST53 6618_contig000080, whole genome shotgun sequence

⇒Summary: seq-len = 13545 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11783-12996 bp Zoom in on locus 1 x19 CRISPR array Location: 11783-12996 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 11783-12996 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11783-12996 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MOTE01000015.1 Clostridioides difficile strain 6618-NonSp/ST53 6618_contig000015, whole genome shotgun sequence

⇒Summary: seq-len = 65976 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56543-57165 bp Zoom in on locus 1 x10 CRISPR array Location: 56543-57165 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 56543-57165 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56543-57165 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MOTE01000113.1 Clostridioides difficile strain 6618-NonSp/ST53 6618_contig000113, whole genome shotgun sequence

⇒Summary: seq-len = 4838 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 200-1212 bp Zoom in on locus 1 x16 CRISPR array Location: 200-1212 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 200-1212 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 200-1212 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MOTE01000001.1 Clostridioides difficile strain 6618-NonSp/ST53 6618_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 224132 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60525-68390 bp 2 Locus 2: 141661-141754 bp Zoom in on locus 1 Zoom in on locus 2 x2 Gene: cd09641:cas3HD Type: Type-I Location: 60525-62933 bp Gene: cd09693:cas5 Type: Type-I Location: 62960-63757 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 63773-64786 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 64806-66281 bp Gene: pfam01881:cas6 Type: other Location: 66286-67023 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 67281-68390 bp CRISPR array Location: 141661-141754 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 141661-141754 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 141661-141754 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: MOTE01000043.1 Clostridioides difficile strain 6618-NonSp/ST53 6618_contig000043, whole genome shotgun sequence

⇒Summary: seq-len = 29340 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5767-6588 bp Zoom in on locus 1 x13 CRISPR array Location: 5767-6588 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 5767-6588 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5767-6588 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)