CRISPRone

CRISPRone report for GCA_002303485.1_ASM230348v1

♦ Seq 1: MOTF01000129.1 Clostridioides difficile strain 6619-CF/ST37 6619_contig000129, whole genome shotgun sequence

⇒Summary: seq-len = 3817 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2833-3453 bp Zoom in on locus 1 x10 CRISPR array Location: 2833-3453 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2833-3453 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2833-3453 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOTF01000033.1 Clostridioides difficile strain 6619-CF/ST37 6619_contig000033, whole genome shotgun sequence

⇒Summary: seq-len = 42046 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12894-13054 bp Zoom in on locus 1 x3 CRISPR array Location: 12894-13054 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 12894-13054 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12894-13054 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOTF01000018.1 Clostridioides difficile strain 6619-CF/ST37 6619_contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 64329 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61085-61180 bp Zoom in on locus 1 x2 CRISPR array Location: 61085-61180 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 61085-61180 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61085-61180 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOTF01000100.1 Clostridioides difficile strain 6619-CF/ST37 6619_contig000100, whole genome shotgun sequence

⇒Summary: seq-len = 9191 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2376-2796 bp Zoom in on locus 1 x7 CRISPR array Location: 2376-2796 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2376-2796 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2376-2796 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOTF01000006.1 Clostridioides difficile strain 6619-CF/ST37 6619_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 102744 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98781-99138 bp Zoom in on locus 1 x6 CRISPR array Location: 98781-99138 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 98781-99138 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 98781-99138 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOTF01000012.1 Clostridioides difficile strain 6619-CF/ST37 6619_contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 75495 bp; # of CRISPR array = 0; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 224-9947 bp 2 Locus 2: 61157-72115 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 224-1333 bp Gene: cas14:cas14 Type: Type-V Location: 1486-2658 bp Gene: unk Type: unknown Location: 2686-3144 bp Gene: pfam01881:cas6 Type: other Location: 3458-4195 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 4200-5666 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5686-6699 bp Gene: cd09693:cas5 Type: Type-I Location: 6715-7512 bp Gene: cd09641:cas3HD Type: Type-I Location: 7539-9947 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 61157-61642 bp Gene: cd06127:DEDDh Type: Type-I Location: 68445-69491 bp Gene: unk Type: unknown Location: 69863-70369 bp Gene: unk Type: unknown Location: 70782-71450 bp Gene: cd06127:DEDDh Type: Type-I Location: 71609-72115 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)