CRISPRone

CRISPRone report for GCA_002303505.1_ASM230350v1

♦ Seq 1: MOTG01000023.1 Clostridioides difficile strain 6620-N/ST10 LCH6620_contig000023, whole genome shotgun sequence

⇒Summary: seq-len = 63261 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53176-53270 bp Zoom in on locus 1 x2 CRISPR array Location: 53176-53270 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 53176-53270 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53176-53270 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOTG01000029.1 Clostridioides difficile strain 6620-N/ST10 LCH6620_contig000029, whole genome shotgun sequence

⇒Summary: seq-len = 56453 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28463-36328 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28463-30871 bp Gene: cd09693:cas5 Type: Type-I Location: 30898-31695 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31711-32724 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32744-34219 bp Gene: pfam01881:cas6 Type: other Location: 34224-34961 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35219-36328 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOTG01000019.1 Clostridioides difficile strain 6620-N/ST10 LCH6620_contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 71248 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33389-33812 bp Zoom in on locus 1 x7 CRISPR array Location: 33389-33812 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 33389-33812 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33389-33812 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOTG01000011.1 Clostridioides difficile strain 6620-N/ST10 LCH6620_contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 96652 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22360-24098 bp Zoom in on locus 1 x27 CRISPR array Location: 22360-24098 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 22360-24098 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22360-24098 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOTG01000047.1 Clostridioides difficile strain 6620-N/ST10 LCH6620_contig000047, whole genome shotgun sequence

⇒Summary: seq-len = 29507 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18564-20749 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 18564-18789 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18564-18789 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 20589-20749 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 20589-20749 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18564-18789 bp]: array | spacers
           [Locus range 20589-20749 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOTG01000045.1 Clostridioides difficile strain 6620-N/ST10 LCH6620_contig000045, whole genome shotgun sequence

⇒Summary: seq-len = 31727 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7411-17656 bp Zoom in on locus 1 x11 CRISPR array Location: 7411-8091 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 7411-8091 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 8275-8541 bp Gene: cd09722:cas1 Type: universal Location: 8544-9524 bp Gene: pfam01930:cas4 Type: Type-I Location: 9527-10045 bp Gene: COG1203:cas3 Type: Type-I Location: 10093-12414 bp Gene: cd09693:cas5 Type: Type-I Location: 12425-13126 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13128-14042 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 14044-15921 bp Gene: pfam01881:cas6 Type: other Location: 15927-16664 bp Gene: pfam13280:WYL Type: other Location: 16742-17656 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7411-8091 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOTG01000006.1 Clostridioides difficile strain 6620-N/ST10 LCH6620_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 132729 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18708-18937 bp Zoom in on locus 1 x4 CRISPR array Location: 18708-18937 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18708-18937 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18708-18937 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MOTG01000035.1 Clostridioides difficile strain 6620-N/ST10 LCH6620_contig000035, whole genome shotgun sequence

⇒Summary: seq-len = 48811 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45051-45738 bp Zoom in on locus 1 x11 CRISPR array Location: 45051-45738 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 45051-45738 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45051-45738 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MOTG01000069.1 Clostridioides difficile strain 6620-N/ST10 LCH6620_contig000069, whole genome shotgun sequence

⇒Summary: seq-len = 11695 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5191-5354 bp Zoom in on locus 1 x3 CRISPR array Location: 5191-5354 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5191-5354 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5191-5354 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MOTG01000033.1 Clostridioides difficile strain 6620-N/ST10 LCH6620_contig000033, whole genome shotgun sequence

⇒Summary: seq-len = 49385 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28098-29443 bp Zoom in on locus 1 x21 CRISPR array Location: 28098-29443 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 28098-29443 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28098-29443 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: MOTG01000025.1 Clostridioides difficile strain 6620-N/ST10 LCH6620_contig000025, whole genome shotgun sequence

⇒Summary: seq-len = 62826 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9030-9456 bp Zoom in on locus 1 x7 CRISPR array Location: 9030-9456 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 9030-9456 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9030-9456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)