CRISPRone

CRISPRone report for GCA_002303525.1_ASM230352v1

♦ Seq 1: MOTH01000039.1 Clostridioides difficile strain 6621-NonSp/ST10 LCH6621_contig000039, whole genome shotgun sequence

⇒Summary: seq-len = 29507 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18564-20749 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 18564-18789 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18564-18789 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 20589-20749 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 20589-20749 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18564-18789 bp]: array | spacers
           [Locus range 20589-20749 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOTH01000002.1 Clostridioides difficile strain 6621-NonSp/ST10 LCH6621_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 254457 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 151291-151716 bp Zoom in on locus 1 x7 CRISPR array Location: 151291-151716 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 151291-151716 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 151291-151716 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOTH01000019.1 Clostridioides difficile strain 6621-NonSp/ST10 LCH6621_contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 88565 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5826-6249 bp Zoom in on locus 1 x7 CRISPR array Location: 5826-6249 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5826-6249 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5826-6249 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOTH01000036.1 Clostridioides difficile strain 6621-NonSp/ST10 LCH6621_contig000036, whole genome shotgun sequence

⇒Summary: seq-len = 35092 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32901-33130 bp Zoom in on locus 1 x4 CRISPR array Location: 32901-33130 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 32901-33130 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32901-33130 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOTH01000012.1 Clostridioides difficile strain 6621-NonSp/ST10 LCH6621_contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 111139 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1603-1698 bp 2 Locus 2: 74978-82843 bp Zoom in on locus 1 x2 Zoom in on locus 2 CRISPR array Location: 1603-1698 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1603-1698 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 74978-76087 bp Gene: pfam01881:cas6 Type: other Location: 76345-77082 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 77087-78562 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 78582-79595 bp Gene: cd09693:cas5 Type: Type-I Location: 79611-80408 bp Gene: cd09641:cas3HD Type: Type-I Location: 80435-82843 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1603-1698 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOTH01000004.1 Clostridioides difficile strain 6621-NonSp/ST10 LCH6621_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 226286 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17914-18602 bp 2 Locus 2: 193728-195074 bp Zoom in on locus 1 x11 Zoom in on locus 2 x21 CRISPR array Location: 17914-18602 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 17914-18602 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 193728-195074 bp Num of repeats: 21 Spacers: s11-s30 CRISPR array Location: 193728-195074 bp Num of repeats: 21 Spacers: s11-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17914-18602 bp]: array | spacers
           [Locus range 193728-195074 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOTH01000003.1 Clostridioides difficile strain 6621-NonSp/ST10 LCH6621_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 232125 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166807-177052 bp Zoom in on locus 1 x11 CRISPR array Location: 166807-167487 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 166807-167487 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 167671-167937 bp Gene: cd09722:cas1 Type: universal Location: 167940-168920 bp Gene: pfam01930:cas4 Type: Type-I Location: 168923-169441 bp Gene: COG1203:cas3 Type: Type-I Location: 169489-171810 bp Gene: cd09693:cas5 Type: Type-I Location: 171821-172522 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 172524-173438 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 173440-175317 bp Gene: pfam01881:cas6 Type: other Location: 175323-176060 bp Gene: pfam13280:WYL Type: other Location: 176138-177052 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 166807-167487 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MOTH01000031.1 Clostridioides difficile strain 6621-NonSp/ST10 LCH6621_contig000031, whole genome shotgun sequence

⇒Summary: seq-len = 53307 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35117-36856 bp Zoom in on locus 1 x27 CRISPR array Location: 35117-36856 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 35117-36856 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35117-36856 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)