CRISPRone

CRISPRone report for GCA_002303545.1_ASM230354v1

♦ Seq 1: MOTI01000050.1 Clostridioides difficile strain 6622-CF/ST37 6622_contig000050, whole genome shotgun sequence

⇒Summary: seq-len = 25756 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 333-10056 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 333-2741 bp Gene: cd09693:cas5 Type: Type-I Location: 2768-3565 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3581-4594 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 4614-6080 bp Gene: pfam01881:cas6 Type: other Location: 6085-6822 bp Gene: unk Type: unknown Location: 7136-7594 bp Gene: cas14:cas14 Type: Type-V Location: 7622-8794 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 8947-10056 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOTI01000070.1 Clostridioides difficile strain 6622-CF/ST37 6622_contig000070, whole genome shotgun sequence

⇒Summary: seq-len = 19451 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10384-10741 bp Zoom in on locus 1 x6 CRISPR array Location: 10384-10741 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 10384-10741 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10384-10741 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOTI01000155.1 Clostridioides difficile strain 6622-CF/ST37 6622_contig000155, whole genome shotgun sequence

⇒Summary: seq-len = 9237 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3066-3686 bp Zoom in on locus 1 x10 CRISPR array Location: 3066-3686 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 3066-3686 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3066-3686 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOTI01000121.1 Clostridioides difficile strain 6622-CF/ST37 6622_contig000121, whole genome shotgun sequence

⇒Summary: seq-len = 11853 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9405-9566 bp Zoom in on locus 1 x3 CRISPR array Location: 9405-9566 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9405-9566 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9405-9566 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOTI01000009.1 Clostridioides difficile strain 6622-CF/ST37 6622_contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 51403 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2391-2485 bp Zoom in on locus 1 x2 CRISPR array Location: 2391-2485 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2391-2485 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2391-2485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOTI01000010.1 Clostridioides difficile strain 6622-CF/ST37 6622_contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 50070 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12168-16044 bp Zoom in on locus 1 x2 x14 x6 x2 CRISPR array Location: 12168-12262 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12168-12262 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 14044-14930 bp Num of repeats: 14 Spacers: s2-s14 CRISPR array Location: 14044-14930 bp Num of repeats: 14 Spacers: s2-s14 CRISPR array Location: 15533-15890 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 15533-15890 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 15952-16044 bp Num of repeats: 2 Spacers: s20-s20 CRISPR array Location: 15952-16044 bp Num of repeats: 2 Spacers: s20-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12168-12262 bp]: array | spacers
           [Locus range 14044-14930 bp]: array | spacers
           [Locus range 15533-15890 bp]: array | spacers
           [Locus range 15952-16044 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOTI01000185.1 Clostridioides difficile strain 6622-CF/ST37 6622_contig000185, whole genome shotgun sequence

⇒Summary: seq-len = 6556 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3708-4127 bp Zoom in on locus 1 x7 CRISPR array Location: 3708-4127 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 3708-4127 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3708-4127 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)