CRISPRone

CRISPRone report for GCA_002303655.1_ASM230365v1

♦ Seq 1: MOTL01000001.1 Clostridioides difficile strain 6627-AL/ST58 6627_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 547513 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46755-46849 bp 2 Locus 2: 120128-128437 bp 3 Locus 3: 291814-292635 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x13 CRISPR array Location: 46755-46849 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 46755-46849 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 120128-121237 bp Gene: unk Type: unknown Location: 121671-121847 bp Gene: pfam01881:cas6 Type: other Location: 121948-122685 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 122690-124156 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 124176-125189 bp Gene: cd09693:cas5 Type: Type-I Location: 125205-126002 bp Gene: cd09641:cas3HD Type: Type-I Location: 126029-128437 bp CRISPR array Location: 291814-292635 bp Num of repeats: 13 Spacers: s2-s13 CRISPR array Location: 291814-292635 bp Num of repeats: 13 Spacers: s2-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 46755-46849 bp]: array | spacers
           [Locus range 291814-292635 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOTL01000011.1 Clostridioides difficile strain 6627-AL/ST58 6627_contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 126573 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44875-45959 bp 2 Locus 2: 120831-121125 bp Zoom in on locus 1 x17 Zoom in on locus 2 x5 CRISPR array Location: 44875-45959 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 44875-45959 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 120831-121125 bp Num of repeats: 5 Spacers: s17-s20 CRISPR array Location: 120831-121125 bp Num of repeats: 5 Spacers: s17-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44875-45959 bp]: array | spacers
           [Locus range 120831-121125 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOTL01000013.1 Clostridioides difficile strain 6627-AL/ST58 6627_contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 119342 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56949-58353 bp Zoom in on locus 1 x22 CRISPR array Location: 56949-58353 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 56949-58353 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56949-58353 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOTL01000006.1 Clostridioides difficile strain 6627-AL/ST58 6627_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 201521 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15533-15950 bp Zoom in on locus 1 x7 CRISPR array Location: 15533-15950 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 15533-15950 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15533-15950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOTL01000020.1 Clostridioides difficile strain 6627-AL/ST58 6627_contig000020, whole genome shotgun sequence

⇒Summary: seq-len = 64030 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18266-18890 bp Zoom in on locus 1 x10 CRISPR array Location: 18266-18890 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 18266-18890 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18266-18890 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOTL01000005.1 Clostridioides difficile strain 6627-AL/ST58 6627_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 203266 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117803-118624 bp Zoom in on locus 1 x13 CRISPR array Location: 117803-118624 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 117803-118624 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 117803-118624 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOTL01000002.1 Clostridioides difficile strain 6627-AL/ST58 6627_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 535846 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 269426-279624 bp Zoom in on locus 1 x11 Gene: pfam13280:WYL Type: other Location: 269426-270313 bp Gene: pfam01881:cas6 Type: other Location: 270391-271128 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 271134-272984 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 272986-273900 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 273902-274603 bp Gene: COG1203:cas3 Type: Type-I Location: 274614-276935 bp Gene: pfam01930:cas4 Type: Type-I Location: 276950-277501 bp Gene: cd09722:cas1 Type: universal Location: 277504-278484 bp Gene: cd09725:cas2 Type: universal Location: 278487-278753 bp CRISPR array Location: 278937-279624 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 278937-279624 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 278937-279624 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)