CRISPRone

CRISPRone report for GCA_002303675.1_ASM230367v1

♦ Seq 1: MOTM01000012.1 Clostridioides difficile strain 6628-AL/ST58 6628_contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 134579 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46255-47339 bp 2 Locus 2: 122211-122505 bp Zoom in on locus 1 x17 Zoom in on locus 2 x5 CRISPR array Location: 46255-47339 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 46255-47339 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 122211-122505 bp Num of repeats: 5 Spacers: s17-s20 CRISPR array Location: 122211-122505 bp Num of repeats: 5 Spacers: s17-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46255-47339 bp]: array | spacers
           [Locus range 122211-122505 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOTM01000018.1 Clostridioides difficile strain 6628-AL/ST58 6628_contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 77517 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18963-20368 bp Zoom in on locus 1 x22 CRISPR array Location: 18963-20368 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 18963-20368 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18963-20368 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOTM01000007.1 Clostridioides difficile strain 6628-AL/ST58 6628_contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 201796 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185572-185990 bp Zoom in on locus 1 x7 CRISPR array Location: 185572-185990 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 185572-185990 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185572-185990 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOTM01000006.1 Clostridioides difficile strain 6628-AL/ST58 6628_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 210093 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117881-118702 bp Zoom in on locus 1 x13 CRISPR array Location: 117881-118702 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 117881-118702 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 117881-118702 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOTM01000001.1 Clostridioides difficile strain 6628-AL/ST58 6628_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 546817 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254787-255607 bp 2 Locus 2: 418984-427293 bp 3 Locus 3: 500573-500666 bp Zoom in on locus 1 x13 Zoom in on locus 2 Zoom in on locus 3 x2 CRISPR array Location: 254787-255607 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 254787-255607 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09641:cas3HD Type: Type-I Location: 418984-421392 bp Gene: cd09693:cas5 Type: Type-I Location: 421419-422216 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 422232-423245 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 423265-424731 bp Gene: pfam01881:cas6 Type: other Location: 424736-425473 bp Gene: unk Type: unknown Location: 425574-425750 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 426184-427293 bp CRISPR array Location: 500573-500666 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 500573-500666 bp Num of repeats: 2 Spacers: s13-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 254787-255607 bp]: array | spacers
           [Locus range 500573-500666 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOTM01000020.1 Clostridioides difficile strain 6628-AL/ST58 6628_contig000020, whole genome shotgun sequence

⇒Summary: seq-len = 64059 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45171-45794 bp Zoom in on locus 1 x10 CRISPR array Location: 45171-45794 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 45171-45794 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45171-45794 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOTM01000002.1 Clostridioides difficile strain 6628-AL/ST58 6628_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 507610 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 241190-251388 bp Zoom in on locus 1 x11 Gene: pfam13280:WYL Type: other Location: 241190-242077 bp Gene: pfam01881:cas6 Type: other Location: 242155-242892 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 242898-244748 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 244750-245664 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 245666-246367 bp Gene: COG1203:cas3 Type: Type-I Location: 246378-248699 bp Gene: pfam01930:cas4 Type: Type-I Location: 248714-249265 bp Gene: cd09722:cas1 Type: universal Location: 249268-250248 bp Gene: cd09725:cas2 Type: universal Location: 250251-250517 bp CRISPR array Location: 250701-251388 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 250701-251388 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 250701-251388 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)