CRISPRone

CRISPRone report for GCA_002303715.1_ASM230371v1

♦ Seq 1: MOTO01000002.1 Clostridioides difficile strain 6630-DH/ST42 6630_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 485706 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185935-186294 bp 2 Locus 2: 394408-394703 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185935-186294 bp]: array | spacers
           [Locus range 394408-394703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOTO01000009.1 Clostridioides difficile strain 6630-DH/ST42 6630_contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 151370 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62593-73867 bp Zoom in on locus 1 x27 Gene: pfam13280:WYL Type: other Location: 62593-63480 bp Gene: pfam01881:cas6 Type: other Location: 63558-64295 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 64301-66178 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 66180-67094 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 67096-67797 bp Gene: COG1203:cas3 Type: Type-I Location: 67808-70129 bp Gene: pfam01930:cas4 Type: Type-I Location: 70144-70695 bp Gene: cd09722:cas1 Type: universal Location: 70698-71678 bp Gene: cd09725:cas2 Type: universal Location: 71681-71947 bp CRISPR array Location: 72131-73867 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 72131-73867 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 72131-73867 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOTO01000023.1 Clostridioides difficile strain 6630-DH/ST42 6630_contig000023, whole genome shotgun sequence

⇒Summary: seq-len = 8659 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4722-5736 bp Zoom in on locus 1 x16 CRISPR array Location: 4722-5736 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 4722-5736 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4722-5736 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOTO01000001.1 Clostridioides difficile strain 6630-DH/ST42 6630_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1042425 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 160692-160851 bp 2 Locus 2: 211764-213170 bp 3 Locus 3: 716004-723869 bp 4 Locus 4: 797137-797694 bp Zoom in on locus 1 x3 Zoom in on locus 2 x22 Zoom in on locus 3 Zoom in on locus 4 x9 CRISPR array Location: 160692-160851 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 160692-160851 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 211764-213170 bp Num of repeats: 22 Spacers: s3-s23 CRISPR array Location: 211764-213170 bp Num of repeats: 22 Spacers: s3-s23 Gene: cd09641:cas3HD Type: Type-I Location: 716004-718412 bp Gene: cd09693:cas5 Type: Type-I Location: 718439-719236 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 719252-720265 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 720285-721760 bp Gene: pfam01881:cas6 Type: other Location: 721765-722502 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 722760-723869 bp CRISPR array Location: 797137-797694 bp Num of repeats: 9 Spacers: s24-s31 CRISPR array Location: 797137-797694 bp Num of repeats: 9 Spacers: s24-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 160692-160851 bp]: array | spacers
           [Locus range 211764-213170 bp]: array | spacers
           [Locus range 797137-797694 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOTO01000004.1 Clostridioides difficile strain 6630-DH/ST42 6630_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 196711 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38255-39471 bp Zoom in on locus 1 x19 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38255-39471 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOTO01000008.1 Clostridioides difficile strain 6630-DH/ST42 6630_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 154377 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135557-136383 bp Zoom in on locus 1 x13 CRISPR array Location: 135557-136383 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 135557-136383 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135557-136383 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)