CRISPRone

CRISPRone report for GCA_002304255.1_ASM230425v1

♦ Seq 1: MPGF01000002.1 Clostridioides difficile strain 7462-DH/ST42 7462_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 567981 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254137-265437 bp Zoom in on locus 1 x27 CRISPR array Location: 254137-255872 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 254137-255872 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 256056-256322 bp Gene: cd09722:cas1 Type: universal Location: 256325-257305 bp Gene: pfam01930:cas4 Type: Type-I Location: 257308-257826 bp Gene: COG1203:cas3 Type: Type-I Location: 257874-260195 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 260206-260907 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260909-261823 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261825-263702 bp Gene: pfam01881:cas6 Type: other Location: 263708-264502 bp Gene: pfam13280:WYL Type: other Location: 264523-265437 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 254137-255872 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPGF01000003.1 Clostridioides difficile strain 7462-DH/ST42 7462_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 492360 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 165939-173804 bp 2 Locus 2: 247072-247629 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 165939-168347 bp Gene: cd09693:cas5 Type: Type-I Location: 168374-169171 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 169187-170200 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 170220-171695 bp Gene: pfam01881:cas6 Type: other Location: 171700-172437 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 172695-173804 bp CRISPR array Location: 247072-247629 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 247072-247629 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247072-247629 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPGF01000004.1 Clostridioides difficile strain 7462-DH/ST42 7462_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 485655 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185935-186294 bp 2 Locus 2: 394408-394703 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185935-186294 bp]: array | spacers
           [Locus range 394408-394703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPGF01000001.1 Clostridioides difficile strain 7462-DH/ST42 7462_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 746772 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38255-39471 bp 2 Locus 2: 357340-357499 bp 3 Locus 3: 408412-409818 bp Zoom in on locus 1 x19 Zoom in on locus 2 x3 Zoom in on locus 3 x22 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 357340-357499 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 357340-357499 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 408412-409818 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 408412-409818 bp Num of repeats: 22 Spacers: s21-s41 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38255-39471 bp]: array | spacers
           [Locus range 357340-357499 bp]: array | spacers
           [Locus range 408412-409818 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPGF01000008.1 Clostridioides difficile strain 7462-DH/ST42 7462_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 155736 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135557-136646 bp Zoom in on locus 1 x17 CRISPR array Location: 135557-136646 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 135557-136646 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135557-136646 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPGF01000020.1 Clostridioides difficile strain 7462-DH/ST42 7462_contig000020, whole genome shotgun sequence

⇒Summary: seq-len = 8659 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4722-5736 bp Zoom in on locus 1 x16 CRISPR array Location: 4722-5736 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 4722-5736 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4722-5736 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)