CRISPRone

CRISPRone report for GCA_002304575.1_ASM230457v1

♦ Seq 1: MOPR01000013.1 Clostridioides difficile strain 5504-L/ST55 LCH5504_contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 85037 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 66434-66794 bp Zoom in on locus 1 x6 CRISPR array Location: 66434-66794 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 66434-66794 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 66434-66794 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOPR01000012.1 Clostridioides difficile strain 5504-L/ST55 LCH5504_contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 97380 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56609-59152 bp Zoom in on locus 1 x39 CRISPR array Location: 56609-59152 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 56609-59152 bp Num of repeats: 39 Spacers: s1-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56609-59152 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOPR01000001.1 Clostridioides difficile strain 5504-L/ST55 LCH5504_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1100337 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 606322-607873 bp 2 Locus 2: 773236-781554 bp 3 Locus 3: 854834-855523 bp Zoom in on locus 1 x24 Zoom in on locus 2 Zoom in on locus 3 x11 CRISPR array Location: 606322-607873 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 606322-607873 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09641:cas3HD Type: Type-I Location: 773236-775644 bp Gene: cd09693:cas5 Type: Type-I Location: 775671-776468 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 776484-777497 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 777517-778992 bp Gene: pfam01881:cas6 Type: other Location: 778997-779734 bp Gene: unk Type: unknown Location: 779835-780011 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 780445-781554 bp CRISPR array Location: 854834-855523 bp Num of repeats: 11 Spacers: s24-s33 CRISPR array Location: 854834-855523 bp Num of repeats: 11 Spacers: s24-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 606322-607873 bp]: array | spacers
           [Locus range 854834-855523 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOPR01000015.1 Clostridioides difficile strain 5504-L/ST55 LCH5504_contig000015, whole genome shotgun sequence

⇒Summary: seq-len = 53960 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20151-22337 bp Zoom in on locus 1 x2 x5 CRISPR array Location: 20151-20245 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 20151-20245 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 22042-22337 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 22042-22337 bp Num of repeats: 5 Spacers: s2-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20151-20245 bp]: array | spacers
           [Locus range 22042-22337 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOPR01000002.1 Clostridioides difficile strain 5504-L/ST55 LCH5504_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 525999 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189611-190766 bp 2 Locus 2: 430655-431740 bp Zoom in on locus 1 x18 Zoom in on locus 2 x17 CRISPR array Location: 189611-190766 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 189611-190766 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 430655-431740 bp Num of repeats: 17 Spacers: s18-s33 CRISPR array Location: 430655-431740 bp Num of repeats: 17 Spacers: s18-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189611-190766 bp]: array | spacers
           [Locus range 430655-431740 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOPR01000003.1 Clostridioides difficile strain 5504-L/ST55 LCH5504_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 519873 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53310-60328 bp 2 Locus 2: 259671-271669 bp Zoom in on locus 1 x13 Zoom in on locus 2 x38 Gene: cd09693:cas5 Type: Type-I Location: 53310-53957 bp Gene: pfam01881:cas6 Type: other Location: 53948-54712 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 54714-55862 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 55883-56953 bp Gene: COG1203:cas3 Type: Type-I Location: 56964-58946 bp CRISPR array Location: 59512-60328 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 59512-60328 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam13280:WYL Type: other Location: 259671-260558 bp Gene: pfam01881:cas6 Type: other Location: 260636-261373 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261379-263256 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 263258-264172 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 264174-264875 bp Gene: cd09641:cas3HD Type: Type-I Location: 264886-267207 bp Gene: pfam01930:cas4 Type: Type-I Location: 267222-267773 bp Gene: cd09722:cas1 Type: universal Location: 267776-268756 bp Gene: cd09725:cas2 Type: universal Location: 268759-269025 bp CRISPR array Location: 269209-271669 bp Num of repeats: 38 Spacers: s13-s49 CRISPR array Location: 269209-271669 bp Num of repeats: 38 Spacers: s13-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 59512-60328 bp]: array | spacers
           [Locus range 269209-271669 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOPR01000009.1 Clostridioides difficile strain 5504-L/ST55 LCH5504_contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 111231 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10785-11010 bp Zoom in on locus 1 x4 CRISPR array Location: 10785-11010 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 10785-11010 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10785-11010 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)