CRISPRone

CRISPRone report for GCA_002304585.1_ASM230458v1

♦ Seq 1: MOQZ01000016.1 Clostridioides difficile strain 6592-G/ST8 6592_contig000016, whole genome shotgun sequence

⇒Summary: seq-len = 101968 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3690-4441 bp Zoom in on locus 1 x12 CRISPR array Location: 3690-4441 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 3690-4441 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3690-4441 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOQZ01000032.1 Clostridioides difficile strain 6592-G/ST8 6592_contig000032, whole genome shotgun sequence

⇒Summary: seq-len = 22951 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20616-22683 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 20616-20984 bp Gene: cls000707:cas10 Type: Type-III Location: 21160-22683 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOQZ01000026.1 Clostridioides difficile strain 6592-G/ST8 6592_contig000026, whole genome shotgun sequence

⇒Summary: seq-len = 50940 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5087-5248 bp Zoom in on locus 1 x3 CRISPR array Location: 5087-5248 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5087-5248 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5087-5248 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOQZ01000002.1 Clostridioides difficile strain 6592-G/ST8 6592_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 338400 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 146861-154726 bp 2 Locus 2: 227974-228531 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 146861-149269 bp Gene: cd09693:cas5 Type: Type-I Location: 149296-150093 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 150109-151122 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 151142-152617 bp Gene: pfam01881:cas6 Type: other Location: 152622-153359 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 153617-154726 bp CRISPR array Location: 227974-228531 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 227974-228531 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 227974-228531 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOQZ01000001.1 Clostridioides difficile strain 6592-G/ST8 6592_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 485151 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185250-185543 bp 2 Locus 2: 393685-394106 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 CRISPR array Location: 185250-185543 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 185250-185543 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 393685-394106 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 393685-394106 bp Num of repeats: 7 Spacers: s5-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185250-185543 bp]: array | spacers
           [Locus range 393685-394106 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOQZ01000029.1 Clostridioides difficile strain 6592-G/ST8 6592_contig000029, whole genome shotgun sequence

⇒Summary: seq-len = 38958 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38254-38615 bp Zoom in on locus 1 x6 CRISPR array Location: 38254-38615 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38254-38615 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38254-38615 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOQZ01000005.1 Clostridioides difficile strain 6592-G/ST8 6592_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 213567 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91813-103869 bp Zoom in on locus 1 x46 Gene: cd09652:cas6 Type: other Location: 91813-92508 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 92520-94259 bp Gene: pfam05107:cas7b Type: Type-I Location: 94252-95241 bp Gene: cd09693:cas5 Type: Type-I Location: 95243-95983 bp Gene: cd09641:cas3HD Type: Type-I Location: 96007-98565 bp CRISPR array Location: 98755-101757 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 98755-101757 bp Num of repeats: 46 Spacers: s1-s45 Gene: pfam01930:cas4 Type: Type-I Location: 101841-102335 bp Gene: cd09722:cas1 Type: universal Location: 102361-103368 bp Gene: cd09725:cas2 Type: universal Location: 103579-103869 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 98755-101757 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MOQZ01000012.1 Clostridioides difficile strain 6592-G/ST8 6592_contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 131495 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18573-18800 bp Zoom in on locus 1 x4 CRISPR array Location: 18573-18800 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18573-18800 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18573-18800 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)