CRISPRone

CRISPRone report for GCA_002312375.1_ASM231237v1

♦ Seq 1: MWYG01000026.1 Pseudomonas aeruginosa strain 358 scaffold_25, whole genome shotgun sequence

⇒Summary: seq-len = 49135 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38394-48813 bp Zoom in on locus 1 x19 x7 CRISPR array Location: 38394-39502 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38394-39502 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 39685-40248 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40252-41280 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41291-42274 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42261-43562 bp Gene: COG1203:cas3 Type: Type-I Location: 43973-47203 bp Gene: cd09718:cas1 Type: universal Location: 47200-48174 bp CRISPR array Location: 48426-48813 bp Num of repeats: 7 Spacers: s19-s24 CRISPR array Location: 48426-48813 bp Num of repeats: 7 Spacers: s19-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38394-39502 bp]: array | spacers
           [Locus range 48426-48813 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MWYG01000044.1 Pseudomonas aeruginosa strain 358 scaffold_43, whole genome shotgun sequence

⇒Summary: seq-len = 960 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 519-667 bp Zoom in on locus 1 x3 CRISPR array Location: 519-667 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 519-667 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 519-667 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MWYG01000014.1 Pseudomonas aeruginosa strain 358 scaffold_13, whole genome shotgun sequence

⇒Summary: seq-len = 143763 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 519-1268 bp Zoom in on locus 1 x13 CRISPR array Location: 519-1268 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 519-1268 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 519-1268 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)