CRISPRone

CRISPRone report for GCA_002312385.1_ASM231238v1

♦ Seq 1: MWYH01000010.1 Pseudomonas aeruginosa strain 279 scaffold_9, whole genome shotgun sequence

⇒Summary: seq-len = 210184 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 208921-209669 bp Zoom in on locus 1 x13 CRISPR array Location: 208921-209669 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 208921-209669 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 208921-209669 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MWYH01000017.1 Pseudomonas aeruginosa strain 279 scaffold_16, whole genome shotgun sequence

⇒Summary: seq-len = 48792 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38400-48279 bp Zoom in on locus 1 x7 x10 CRISPR array Location: 38400-38788 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 38400-38788 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09739:cas6f Type: other Location: 38971-39534 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39538-40566 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40577-41560 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41547-42848 bp Gene: COG1203:cas3 Type: Type-I Location: 43259-46489 bp Gene: cd09718:cas1 Type: universal Location: 46486-47460 bp CRISPR array Location: 47712-48279 bp Num of repeats: 10 Spacers: s7-s15 CRISPR array Location: 47712-48279 bp Num of repeats: 10 Spacers: s7-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38400-38788 bp]: array | spacers
           [Locus range 47712-48279 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)