CRISPRone

CRISPRone report for GCA_002312415.1_ASM231241v1

♦ Seq 1: MWYJ01000002.1 Pseudomonas aeruginosa strain E-500 scaffold_1, whole genome shotgun sequence

⇒Summary: seq-len = 1113970 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 407668-408655 bp Zoom in on locus 1 x17 CRISPR array Location: 407668-408655 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 407668-408655 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 407668-408655 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MWYJ01000016.1 Pseudomonas aeruginosa strain E-500 scaffold_15, whole genome shotgun sequence

⇒Summary: seq-len = 90735 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 41767-52324 bp Zoom in on locus 1 x20 x14 CRISPR array Location: 41767-42935 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 41767-42935 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09718:cas1 Type: universal Location: 43195-44169 bp Gene: COG1203:cas3 Type: Type-I Location: 44166-47396 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 47454-48758 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 48745-49728 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 49739-50767 bp Gene: cd09739:cas6f Type: other Location: 50771-51334 bp CRISPR array Location: 51517-52324 bp Num of repeats: 14 Spacers: s20-s32 CRISPR array Location: 51517-52324 bp Num of repeats: 14 Spacers: s20-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 41767-42935 bp]: array | spacers
           [Locus range 51517-52324 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)