CRISPRone

CRISPRone report for GCA_002312575.1_ASM231257v1

♦ Seq 1: MWXM01000016.1 Pseudomonas aeruginosa strain 707A scaffold_15, whole genome shotgun sequence

⇒Summary: seq-len = 53539 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 516-1265 bp Zoom in on locus 1 x13 CRISPR array Location: 516-1265 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 516-1265 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 516-1265 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MWXM01000008.1 Pseudomonas aeruginosa strain 707A scaffold_7, whole genome shotgun sequence

⇒Summary: seq-len = 600859 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38336-48935 bp Zoom in on locus 1 x19 x10 CRISPR array Location: 38336-39444 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38336-39444 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 39627-40190 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40194-41222 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41233-42216 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42203-43504 bp Gene: COG1203:cas3 Type: Type-I Location: 43915-47145 bp Gene: cd09718:cas1 Type: universal Location: 47142-48116 bp CRISPR array Location: 48368-48935 bp Num of repeats: 10 Spacers: s19-s27 CRISPR array Location: 48368-48935 bp Num of repeats: 10 Spacers: s19-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38336-39444 bp]: array | spacers
           [Locus range 48368-48935 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)