CRISPRone

CRISPRone report for GCA_002312615.1_ASM231261v1

♦ Seq 1: MWXV01000005.1 Pseudomonas aeruginosa strain 506 scaffold_4, whole genome shotgun sequence

⇒Summary: seq-len = 307830 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 706-1514 bp Zoom in on locus 1 x14 CRISPR array Location: 706-1514 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 706-1514 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 706-1514 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MWXV01000027.1 Pseudomonas aeruginosa strain 506 scaffold_26, whole genome shotgun sequence

⇒Summary: seq-len = 48679 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1342-11936 bp Zoom in on locus 1 x16 x12 CRISPR array Location: 1342-2270 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1342-2270 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09718:cas1 Type: universal Location: 2531-3505 bp Gene: COG1203:cas3 Type: Type-I Location: 3502-6732 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7371-8489 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8476-9459 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9470-10498 bp Gene: cd09739:cas6f Type: other Location: 10502-11065 bp CRISPR array Location: 11249-11936 bp Num of repeats: 12 Spacers: s16-s26 CRISPR array Location: 11249-11936 bp Num of repeats: 12 Spacers: s16-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1342-2270 bp]: array | spacers
           [Locus range 11249-11936 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)