CRISPRone

CRISPRone report for GCA_002325925.1_ASM232592v1

♦ Seq 1: NQYY01000040.1 Pseudomonas aeruginosa strain W5a-2 NODE_40_length_37187_cov_24.0622, whole genome shotgun sequence

⇒Summary: seq-len = 37187 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 162-609 bp Zoom in on locus 1 x8 CRISPR array Location: 162-609 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 162-609 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 162-609 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NQYY01000054.1 Pseudomonas aeruginosa strain W5a-2 NODE_54_length_11797_cov_28.3308, whole genome shotgun sequence

⇒Summary: seq-len = 11797 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1178-11385 bp Zoom in on locus 1 x19 x8 CRISPR array Location: 1178-2288 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1178-2288 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 2548-3522 bp Gene: COG1203:cas3 Type: Type-I Location: 3519-6749 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6807-8111 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8098-9081 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9092-10120 bp Gene: cd09739:cas6f Type: other Location: 10124-10687 bp CRISPR array Location: 10937-11385 bp Num of repeats: 8 Spacers: s19-s25 CRISPR array Location: 10937-11385 bp Num of repeats: 8 Spacers: s19-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1178-2288 bp]: array | spacers
           [Locus range 10937-11385 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NQYY01000002.1 Pseudomonas aeruginosa strain W5a-2 NODE_2_length_482340_cov_26.6359, whole genome shotgun sequence

⇒Summary: seq-len = 482340 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 380215-381508 bp Zoom in on locus 1 x22 CRISPR array Location: 380215-381508 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 380215-381508 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 380215-381508 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)