CRISPRone

CRISPRone report for GCA_002325985.1_ASM232598v1

♦ Seq 1: NQZD01000028.1 Pseudomonas aeruginosa strain U5b-2 NODE_28_length_76696_cov_18.71, whole genome shotgun sequence

⇒Summary: seq-len = 76696 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29443-39042 bp Zoom in on locus 1 x28 CRISPR array Location: 29443-31265 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 29443-31265 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09725:cas2 Type: universal Location: 31447-31737 bp Gene: cd09721:cas1 Type: universal Location: 31747-32787 bp Gene: pfam01930:cas4 Type: Type-I Location: 32791-33423 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 33442-34311 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 34323-36086 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 36083-36757 bp Gene: cd09641:cas3HD Type: Type-I Location: 36808-39042 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 29443-31265 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NQZD01000018.1 Pseudomonas aeruginosa strain U5b-2 NODE_18_length_115447_cov_13.6923, whole genome shotgun sequence

⇒Summary: seq-len = 115447 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 345-1033 bp Zoom in on locus 1 x12 CRISPR array Location: 345-1033 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 345-1033 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 345-1033 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)