CRISPRone

CRISPRone report for GCA_002326085.1_ASM232608v1

♦ Seq 1: NQZJ01000028.1 Pseudomonas aeruginosa strain S25b-2 NODE_28_length_68531_cov_20.031, whole genome shotgun sequence

⇒Summary: seq-len = 68531 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37510-47888 bp Zoom in on locus 1 x23 x8 CRISPR array Location: 37510-38858 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 37510-38858 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09618:cas6f Type: Subtype-I-F Location: 39041-39604 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39608-40636 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40647-41630 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41617-42921 bp Gene: COG1203:cas3 Type: Type-I Location: 42979-46209 bp Gene: cd09718:cas1 Type: universal Location: 46206-47180 bp CRISPR array Location: 47441-47888 bp Num of repeats: 8 Spacers: s23-s29 CRISPR array Location: 47441-47888 bp Num of repeats: 8 Spacers: s23-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37510-38858 bp]: array | spacers
           [Locus range 47441-47888 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NQZJ01000004.1 Pseudomonas aeruginosa strain S25b-2 NODE_4_length_320597_cov_20.6996, whole genome shotgun sequence

⇒Summary: seq-len = 320597 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192511-193019 bp Zoom in on locus 1 x9 CRISPR array Location: 192511-193019 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 192511-193019 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 192511-193019 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)