CRISPRone

CRISPRone report for GCA_002326095.1_ASM232609v1

♦ Seq 1: NQYW01000052.1 Pseudomonas aeruginosa strain W21b-2 NODE_52_length_45707_cov_6.06795, whole genome shotgun sequence

⇒Summary: seq-len = 45707 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34986-45364 bp Zoom in on locus 1 x15 x16 CRISPR array Location: 34986-35854 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 34986-35854 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 36037-36600 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 36604-37632 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 37643-38626 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 38613-39917 bp Gene: COG1203:cas3 Type: Type-I Location: 39975-43205 bp Gene: cd09718:cas1 Type: universal Location: 43202-44176 bp CRISPR array Location: 44437-45364 bp Num of repeats: 16 Spacers: s15-s29 CRISPR array Location: 44437-45364 bp Num of repeats: 16 Spacers: s15-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34986-35854 bp]: array | spacers
           [Locus range 44437-45364 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NQYW01000086.1 Pseudomonas aeruginosa strain W21b-2 NODE_86_length_8905_cov_7.06972, whole genome shotgun sequence

⇒Summary: seq-len = 8905 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7396-8563 bp Zoom in on locus 1 x20 CRISPR array Location: 7396-8563 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 7396-8563 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7396-8563 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)