CRISPRone

CRISPRone report for GCA_002326125.1_ASM232612v1

♦ Seq 1: NQZC01000028.1 Pseudomonas aeruginosa strain W1c NODE_28_length_77823_cov_26.5943, whole genome shotgun sequence

⇒Summary: seq-len = 77823 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37531-48618 bp Zoom in on locus 1 x20 x17 CRISPR array Location: 37531-38696 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 37531-38696 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 38880-39443 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39447-40475 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40486-41469 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41456-42757 bp Gene: COG1203:cas3 Type: Type-I Location: 43168-46398 bp Gene: cd09718:cas1 Type: universal Location: 46395-47369 bp CRISPR array Location: 47630-48618 bp Num of repeats: 17 Spacers: s20-s35 CRISPR array Location: 47630-48618 bp Num of repeats: 17 Spacers: s20-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37531-38696 bp]: array | spacers
           [Locus range 47630-48618 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NQZC01000009.1 Pseudomonas aeruginosa strain W1c NODE_9_length_255487_cov_26.4843, whole genome shotgun sequence

⇒Summary: seq-len = 255487 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62267-62955 bp Zoom in on locus 1 x12 CRISPR array Location: 62267-62955 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 62267-62955 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62267-62955 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)