CRISPRone

CRISPRone report for GCA_002326165.1_ASM232616v1

♦ Seq 1: NQZG01000002.1 Pseudomonas aeruginosa strain U1j-3 NODE_2_length_411072_cov_13.0117, whole genome shotgun sequence

⇒Summary: seq-len = 411072 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62359-62986 bp Zoom in on locus 1 x11 CRISPR array Location: 62359-62986 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 62359-62986 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62359-62986 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NQZG01000029.1 Pseudomonas aeruginosa strain U1j-3 NODE_29_length_85184_cov_14.3141, whole genome shotgun sequence

⇒Summary: seq-len = 85184 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42280-52865 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 42280-43149 bp Gene: pfam00078:RT Type: other Location: 48058-49326 bp Gene: unk Type: unknown Location: 49476-49874 bp Gene: unk Type: unknown Location: 50058-50237 bp Gene: cls000170:cas4 Type: Type-I Location: 51321-52865 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)