CRISPRone

CRISPRone report for GCA_002326275.1_ASM232627v1

♦ Seq 1: NQZQ01000028.1 Pseudomonas aeruginosa strain S1g NODE_28_length_85197_cov_21.8422, whole genome shotgun sequence

⇒Summary: seq-len = 85197 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42280-52865 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 42280-43149 bp Gene: pfam00078:RT Type: other Location: 48058-49326 bp Gene: unk Type: unknown Location: 49476-49874 bp Gene: unk Type: unknown Location: 50058-50237 bp Gene: cls000170:cas4 Type: Type-I Location: 51321-52865 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NQZQ01000002.1 Pseudomonas aeruginosa strain S1g NODE_2_length_406280_cov_18.945, whole genome shotgun sequence

⇒Summary: seq-len = 406280 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132594-144628 bp Zoom in on locus 1 x26 x21 CRISPR array Location: 132594-134147 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 132594-134147 bp Num of repeats: 26 Spacers: s1-s25 Gene: pfam09707:cas2 Type: universal Location: 134212-134511 bp Gene: cd09719:cas1 Type: universal Location: 134508-135398 bp Gene: pfam08798:cas6e Type: other Location: 135425-135964 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 136011-136673 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 136675-137817 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 137827-138357 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 138354-139922 bp Gene: cd09641:cas3HD Type: Type-I Location: 139925-142606 bp CRISPR array Location: 143379-144628 bp Num of repeats: 21 Spacers: s26-s45 CRISPR array Location: 143379-144628 bp Num of repeats: 21 Spacers: s26-s45 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 132594-134147 bp]: array | spacers
           [Locus range 143379-144628 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)