CRISPRone

CRISPRone report for GCA_002326325.1_ASM232632v1

♦ Seq 1: NQZT01000003.1 Pseudomonas aeruginosa strain P28a NODE_3_length_387316_cov_17.4113, whole genome shotgun sequence

⇒Summary: seq-len = 387316 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73987-74254 bp Zoom in on locus 1 x5 CRISPR array Location: 73987-74254 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 73987-74254 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73987-74254 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NQZT01000009.1 Pseudomonas aeruginosa strain P28a NODE_9_length_232142_cov_16.048, whole genome shotgun sequence

⇒Summary: seq-len = 232142 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38236-49503 bp Zoom in on locus 1 x20 x20 CRISPR array Location: 38236-39401 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 38236-39401 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 39585-40148 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40152-41180 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41191-42174 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42161-43462 bp Gene: COG1203:cas3 Type: Type-I Location: 43873-47103 bp Gene: cd09718:cas1 Type: universal Location: 47100-48074 bp CRISPR array Location: 48335-49503 bp Num of repeats: 20 Spacers: s20-s38 CRISPR array Location: 48335-49503 bp Num of repeats: 20 Spacers: s20-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38236-39401 bp]: array | spacers
           [Locus range 48335-49503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NQZT01000031.1 Pseudomonas aeruginosa strain P28a NODE_31_length_68771_cov_22.4458, whole genome shotgun sequence

⇒Summary: seq-len = 68771 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26451-35051 bp Zoom in on locus 1 x13 Gene: cd09641:cas3HD Type: Type-I Location: 26451-28685 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 28736-29410 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 29407-31170 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 31182-32051 bp Gene: pfam01930:cas4 Type: Type-I Location: 32070-32702 bp Gene: cd09721:cas1 Type: universal Location: 32822-33745 bp Gene: cd09725:cas2 Type: universal Location: 33755-34045 bp CRISPR array Location: 34227-35051 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 34227-35051 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34227-35051 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)