CRISPRone

CRISPRone report for GCA_002326525.1_ASM232652v1

♦ Seq 1: NQZM01000001.1 Pseudomonas aeruginosa strain S14b NODE_1_length_465143_cov_15.1215, whole genome shotgun sequence

⇒Summary: seq-len = 465143 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 464486-464753 bp Zoom in on locus 1 x5 CRISPR array Location: 464486-464753 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 464486-464753 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 464486-464753 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NQZM01000014.1 Pseudomonas aeruginosa strain S14b NODE_14_length_141939_cov_14.1354, whole genome shotgun sequence

⇒Summary: seq-len = 141939 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22250-32581 bp Zoom in on locus 1 x12 x5 CRISPR array Location: 22250-22949 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 22250-22949 bp Num of repeats: 12 Spacers: s1-s11 Gene: pfam09707:cas2 Type: universal Location: 23014-23313 bp Gene: cd09719:cas1 Type: universal Location: 23310-24200 bp Gene: pfam08798:cas6e Type: other Location: 24227-24766 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 24813-25475 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 25477-26619 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 26629-27159 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 27156-28724 bp Gene: cd09641:cas3HD Type: Type-I Location: 28727-31408 bp CRISPR array Location: 32307-32581 bp Num of repeats: 5 Spacers: s12-s15 CRISPR array Location: 32307-32581 bp Num of repeats: 5 Spacers: s12-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22250-22949 bp]: array | spacers
           [Locus range 32307-32581 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)