CRISPRone

CRISPRone report for GCA_002326665.1_ASM232666v1

♦ Seq 1: NRAD01000003.1 Pseudomonas aeruginosa strain env193 NODE_3_length_644360_cov_25.9982, whole genome shotgun sequence

⇒Summary: seq-len = 644360 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 436298-436927 bp Zoom in on locus 1 x11 CRISPR array Location: 436298-436927 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 436298-436927 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 436298-436927 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRAD01000010.1 Pseudomonas aeruginosa strain env193 NODE_10_length_232603_cov_23.6893, whole genome shotgun sequence

⇒Summary: seq-len = 232603 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38236-50163 bp Zoom in on locus 1 x27 x24 CRISPR array Location: 38236-39821 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 38236-39821 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 40005-40568 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40572-41600 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41611-42594 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42581-43882 bp Gene: COG1203:cas3 Type: Type-I Location: 44293-47523 bp Gene: cd09718:cas1 Type: universal Location: 47520-48494 bp CRISPR array Location: 48755-50163 bp Num of repeats: 24 Spacers: s27-s49 CRISPR array Location: 48755-50163 bp Num of repeats: 24 Spacers: s27-s49 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38236-39821 bp]: array | spacers
           [Locus range 48755-50163 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)