CRISPRone

CRISPRone report for GCA_002326675.1_ASM232667v1

♦ Seq 1: NRAK01000002.1 Pseudomonas aeruginosa strain env146b NODE_2_length_463109_cov_9.19279, whole genome shotgun sequence

⇒Summary: seq-len = 463109 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 160136-171198 bp Zoom in on locus 1 x17 x14 CRISPR array Location: 160136-161141 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 160136-161141 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09707:cas2 Type: universal Location: 161206-161505 bp Gene: cd09719:cas1 Type: universal Location: 161616-162392 bp Gene: pfam08798:cas6e Type: other Location: 162419-162958 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 163005-163667 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 163669-164811 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 164821-165351 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 165348-166916 bp Gene: cd09641:cas3HD Type: Type-I Location: 166919-169600 bp CRISPR array Location: 170376-171198 bp Num of repeats: 14 Spacers: s17-s29 CRISPR array Location: 170376-171198 bp Num of repeats: 14 Spacers: s17-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 160136-161141 bp]: array | spacers
           [Locus range 170376-171198 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRAK01000053.1 Pseudomonas aeruginosa strain env146b NODE_53_length_9991_cov_10.3354, whole genome shotgun sequence

⇒Summary: seq-len = 9991 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 353-9442 bp Zoom in on locus 1 x12 Gene: cd09739:cas6f Type: other Location: 353-916 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 920-1948 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1959-2942 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2929-4233 bp Gene: COG1203:cas3 Type: Type-I Location: 4291-7521 bp Gene: cd09718:cas1 Type: universal Location: 7518-8492 bp CRISPR array Location: 8754-9442 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 8754-9442 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8754-9442 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRAK01000044.1 Pseudomonas aeruginosa strain env146b NODE_44_length_35884_cov_7.94365, whole genome shotgun sequence

⇒Summary: seq-len = 35884 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34930-35738 bp Zoom in on locus 1 x14 CRISPR array Location: 34930-35738 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 34930-35738 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34930-35738 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)