CRISPRone

CRISPRone report for GCA_002329725.1_ASM232972v1

♦ Seq 1: NRES01000008.1 Pseudomonas aeruginosa strain SJU-W20_3 NODE_8_length_246932_cov_58.1286, whole genome shotgun sequence

⇒Summary: seq-len = 246932 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53743-64885 bp Zoom in on locus 1 x8 x18 CRISPR array Location: 53743-54199 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 53743-54199 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09641:cas3HD Type: Type-I Location: 54974-57682 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 58044-59612 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 59609-60139 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 60149-61291 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 61293-61955 bp Gene: pfam08798:cas6e Type: other Location: 61930-62541 bp Gene: cd09719:cas1 Type: universal Location: 62568-63458 bp Gene: pfam09707:cas2 Type: universal Location: 63455-63754 bp CRISPR array Location: 63819-64885 bp Num of repeats: 18 Spacers: s8-s24 CRISPR array Location: 63819-64885 bp Num of repeats: 18 Spacers: s8-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53743-54199 bp]: array | spacers
           [Locus range 63819-64885 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRES01000021.1 Pseudomonas aeruginosa strain SJU-W20_3 NODE_21_length_115444_cov_58.612, whole genome shotgun sequence

⇒Summary: seq-len = 115444 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114312-115299 bp Zoom in on locus 1 x17 CRISPR array Location: 114312-115299 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 114312-115299 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 114312-115299 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRES01000034.1 Pseudomonas aeruginosa strain SJU-W20_3 NODE_34_length_46282_cov_49.1985, whole genome shotgun sequence

⇒Summary: seq-len = 46282 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94-9935 bp Zoom in on locus 1 x6 x16 CRISPR array Location: 94-423 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 94-423 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09718:cas1 Type: universal Location: 683-1657 bp Gene: COG1203:cas3 Type: Type-I Location: 1654-4884 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4942-6246 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6233-7216 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7227-8255 bp Gene: cd09739:cas6f Type: other Location: 8259-8822 bp CRISPR array Location: 9007-9935 bp Num of repeats: 16 Spacers: s6-s20 CRISPR array Location: 9007-9935 bp Num of repeats: 16 Spacers: s6-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 94-423 bp]: array | spacers
           [Locus range 9007-9935 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NRES01000074.1 Pseudomonas aeruginosa strain SJU-W20_3 NODE_75_length_1095_cov_71.3558, whole genome shotgun sequence

⇒Summary: seq-len = 1095 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143-950 bp Zoom in on locus 1 x14 CRISPR array Location: 143-950 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 143-950 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 143-950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)