CRISPRone

CRISPRone report for GCA_002330045.1_ASM233004v1

♦ Seq 1: NRFG01000001.1 Pseudomonas aeruginosa strain SJU-S9_1 NODE_1_length_735166_cov_53.8559, whole genome shotgun sequence

⇒Summary: seq-len = 735166 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 625416-635929 bp Zoom in on locus 1 x9 x2 x10 CRISPR array Location: 625416-625934 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 625416-625934 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 626028-626118 bp Num of repeats: 2 Spacers: s9-s9 CRISPR array Location: 626028-626118 bp Num of repeats: 2 Spacers: s9-s9 Gene: cd09641:cas3HD Type: Type-I Location: 626892-629573 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 629576-631144 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 631141-631671 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 631681-632823 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 632825-633487 bp Gene: pfam08798:cas6e Type: other Location: 633462-634073 bp Gene: cd09719:cas1 Type: universal Location: 634100-634990 bp Gene: pfam09707:cas2 Type: universal Location: 634987-635286 bp CRISPR array Location: 635351-635929 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 635351-635929 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 625416-625934 bp]: array | spacers
           [Locus range 626028-626118 bp]: array | spacers
           [Locus range 635351-635929 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRFG01000029.1 Pseudomonas aeruginosa strain SJU-S9_1 NODE_29_length_48884_cov_50.9329, whole genome shotgun sequence

⇒Summary: seq-len = 48884 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1105-11546 bp Zoom in on locus 1 x19 x13 CRISPR array Location: 1105-2215 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1105-2215 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 2476-3450 bp Gene: COG1203:cas3 Type: Type-I Location: 3447-6677 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6735-8039 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8026-9009 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9020-10048 bp Gene: cd09739:cas6f Type: other Location: 10052-10615 bp CRISPR array Location: 10799-11546 bp Num of repeats: 13 Spacers: s19-s30 CRISPR array Location: 10799-11546 bp Num of repeats: 13 Spacers: s19-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1105-2215 bp]: array | spacers
           [Locus range 10799-11546 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)