CRISPRone

CRISPRone report for GCA_002330065.1_ASM233006v1

♦ Seq 1: NRFP01000005.1 Pseudomonas aeruginosa strain S1f NODE_5_length_249899_cov_9.60823, whole genome shotgun sequence

⇒Summary: seq-len = 249899 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104719-116754 bp Zoom in on locus 1 x21 x26 CRISPR array Location: 104719-105969 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 104719-105969 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09641:cas3HD Type: Type-I Location: 106741-109422 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 109425-110993 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 110990-111520 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 111530-112672 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 112674-113336 bp Gene: pfam08798:cas6e Type: other Location: 113311-113922 bp Gene: cd09719:cas1 Type: universal Location: 113949-114839 bp Gene: pfam09707:cas2 Type: universal Location: 114836-115135 bp CRISPR array Location: 115200-116754 bp Num of repeats: 26 Spacers: s21-s45 CRISPR array Location: 115200-116754 bp Num of repeats: 26 Spacers: s21-s45 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 104719-105969 bp]: array | spacers
           [Locus range 115200-116754 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRFP01000029.1 Pseudomonas aeruginosa strain S1f NODE_29_length_85172_cov_11.1135, whole genome shotgun sequence

⇒Summary: seq-len = 85172 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32324-42909 bp Zoom in on locus 1 Gene: cls000170:cas4 Type: Type-I Location: 32324-33868 bp Gene: unk Type: unknown Location: 34952-35131 bp Gene: unk Type: unknown Location: 35315-35713 bp Gene: pfam00078:RT Type: other Location: 35863-37131 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 42040-42909 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)