CRISPRone

CRISPRone report for GCA_002330135.1_ASM233013v1

♦ Seq 1: NRFT01000013.1 Pseudomonas aeruginosa strain env299 NODE_13_length_151707_cov_16.7313, whole genome shotgun sequence

⇒Summary: seq-len = 151707 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32343-42928 bp Zoom in on locus 1 Gene: cls000170:cas4 Type: Type-I Location: 32343-33887 bp Gene: unk Type: unknown Location: 34971-35150 bp Gene: unk Type: unknown Location: 35334-35732 bp Gene: pfam00078:RT Type: other Location: 35882-37150 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 42059-42928 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRFT01000001.1 Pseudomonas aeruginosa strain env299 NODE_1_length_755723_cov_15.8733, whole genome shotgun sequence

⇒Summary: seq-len = 755723 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 545219-555731 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 545219-545737 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 545219-545737 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 546510-549191 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 549194-550762 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 550759-551289 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 551299-552441 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 552443-553105 bp Gene: pfam08798:cas6e Type: other Location: 553080-553691 bp Gene: cd09719:cas1 Type: universal Location: 553718-554608 bp Gene: pfam09707:cas2 Type: universal Location: 554605-554904 bp CRISPR array Location: 554969-555731 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 554969-555731 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 545219-545737 bp]: array | spacers
           [Locus range 554969-555731 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)