CRISPRone

CRISPRone report for GCA_002330165.1_ASM233016v1

♦ Seq 1: NRFU01000011.1 Pseudomonas aeruginosa strain env241b NODE_11_length_174842_cov_10.9237, whole genome shotgun sequence

⇒Summary: seq-len = 174842 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35012-45932 bp Zoom in on locus 1 x20 x20 CRISPR array Location: 35012-36180 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 35012-36180 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 36363-36926 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 36930-37958 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 37969-38952 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 38939-40243 bp Gene: COG1203:cas3 Type: Type-I Location: 40301-43531 bp Gene: cd09718:cas1 Type: universal Location: 43528-44502 bp CRISPR array Location: 44763-45932 bp Num of repeats: 20 Spacers: s20-s38 CRISPR array Location: 44763-45932 bp Num of repeats: 20 Spacers: s20-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 35012-36180 bp]: array | spacers
           [Locus range 44763-45932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRFU01000002.1 Pseudomonas aeruginosa strain env241b NODE_2_length_430889_cov_11.4686, whole genome shotgun sequence

⇒Summary: seq-len = 430889 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132233-142589 bp Zoom in on locus 1 x17 x12 CRISPR array Location: 132233-133237 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 132233-133237 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09707:cas2 Type: universal Location: 133302-133601 bp Gene: cd09719:cas1 Type: universal Location: 133598-133909 bp Gene: pfam08798:cas6e Type: other Location: 133936-134475 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 134522-135184 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 135186-136328 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 136338-136868 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 136865-138433 bp Gene: cd09641:cas3HD Type: Type-I Location: 138436-141117 bp CRISPR array Location: 141890-142589 bp Num of repeats: 12 Spacers: s17-s27 CRISPR array Location: 141890-142589 bp Num of repeats: 12 Spacers: s17-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 132233-133237 bp]: array | spacers
           [Locus range 141890-142589 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)