CRISPRone

CRISPRone report for GCA_002330235.1_ASM233023v1

♦ Seq 1: NRGB01000007.1 Pseudomonas aeruginosa strain env199 NODE_7_length_232603_cov_14.1477, whole genome shotgun sequence

⇒Summary: seq-len = 232603 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182441-194368 bp Zoom in on locus 1 x24 x27 CRISPR array Location: 182441-183850 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 182441-183850 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09718:cas1 Type: universal Location: 184110-185084 bp Gene: COG1203:cas3 Type: Type-I Location: 185081-188311 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 188722-190023 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 190010-190993 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 191004-192032 bp Gene: cd09739:cas6f Type: other Location: 192036-192599 bp CRISPR array Location: 192784-194368 bp Num of repeats: 27 Spacers: s24-s49 CRISPR array Location: 192784-194368 bp Num of repeats: 27 Spacers: s24-s49 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 182441-183850 bp]: array | spacers
           [Locus range 192784-194368 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRGB01000002.1 Pseudomonas aeruginosa strain env199 NODE_2_length_493852_cov_15.1651, whole genome shotgun sequence

⇒Summary: seq-len = 493852 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111014-111642 bp Zoom in on locus 1 x11 CRISPR array Location: 111014-111642 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 111014-111642 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111014-111642 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)