CRISPRone

CRISPRone report for GCA_002330275.1_ASM233027v1

♦ Seq 1: NRAQ01000043.1 Pseudomonas aeruginosa strain env137a NODE_43_length_48637_cov_7.77192, whole genome shotgun sequence

⇒Summary: seq-len = 48637 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207-10342 bp Zoom in on locus 1 x12 x15 CRISPR array Location: 207-895 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 207-895 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 1152-2126 bp Gene: COG1203:cas3 Type: Type-I Location: 2123-5353 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5411-6715 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6702-7685 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7696-8724 bp Gene: cd09739:cas6f Type: other Location: 8728-9291 bp CRISPR array Location: 9475-10342 bp Num of repeats: 15 Spacers: s12-s25 CRISPR array Location: 9475-10342 bp Num of repeats: 15 Spacers: s12-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 207-895 bp]: array | spacers
           [Locus range 9475-10342 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRAQ01000011.1 Pseudomonas aeruginosa strain env137a NODE_11_length_163835_cov_10.3563, whole genome shotgun sequence

⇒Summary: seq-len = 163835 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120991-129724 bp Zoom in on locus 1 x15 Gene: cd09641:cas3HD Type: Type-I Location: 120991-123225 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 123276-123950 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 123947-125710 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 125722-126591 bp Gene: pfam01930:cas4 Type: Type-I Location: 126610-127242 bp Gene: cd09721:cas1 Type: universal Location: 127362-128285 bp Gene: cd09725:cas2 Type: universal Location: 128295-128585 bp CRISPR array Location: 128767-129724 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 128767-129724 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 128767-129724 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRAQ01000024.1 Pseudomonas aeruginosa strain env137a NODE_24_length_106083_cov_8.41977, whole genome shotgun sequence

⇒Summary: seq-len = 106083 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207-955 bp Zoom in on locus 1 x13 CRISPR array Location: 207-955 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 207-955 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207-955 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)